View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7604_low_8 (Length: 215)
Name: NF7604_low_8
Description: NF7604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7604_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 8e-54; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 22831646 - 22831843
Alignment:
| Q |
19 |
aatttgggacctactaagaaatatcctggaacctagctacgaattattactgaaagaaacatcacttgacaaggtttcttaaattgccttatcatctg-- |
116 |
Q |
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| T |
22831646 |
aatttgggacctactaagaaatgtcctggaacctagctacgaattattactgaaagaaacatcacttgacaaagtttcttaaattgccttatcatctgag |
22831745 |
T |
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| Q |
117 |
----------------acatgaatgtgttacacatttgaataaatgagcacattcgaagcacaaattttctttccatctgtagtagtgggggaatatt |
198 |
Q |
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| T |
22831746 |
atatttagtttagtgaaaattaatgtgttacacatttgaataaatgagcacatttgaaccacaatttttctttccatctgtagttgtgggggaatatt |
22831843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 22840673 - 22840772
Alignment:
| Q |
19 |
aatttgggacctactaagaaatatcctggaacctagctacgaattattactgaaagaaacatcacttgacaaggtttcttaaattgcc-ttatcatctga |
117 |
Q |
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| T |
22840673 |
aatttgggtcctactaagaaatgtcctggaacctagctacgaattatttctgaaagaaacatttcatgaccaggttactaaatttgcctttatcatctga |
22840772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 22810396 - 22810470
Alignment:
| Q |
119 |
atgaatgtgttacacatttgaataaatgagcacattcgaagcacaaattttctttccatctgtagtagtgggggaat |
195 |
Q |
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| T |
22810396 |
atgaatgtgttacacatttgaataaatgtgcacatttgaaccac--attttctttccatctgtagtagcgggggaat |
22810470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 22886118 - 22886210
Alignment:
| Q |
19 |
aatttgggacctactaagaaatatcctggaacctagctacgaattattactgaaagaaacatcacttgacaaggtttcttaaattgccttatcatctg |
116 |
Q |
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| T |
22886118 |
aattcgggtcctactaagaaatttcctagaacctagctacgaattattactaaaagaaacatcacatg-----gttactaaaattgccttatcatctg |
22886210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 22859131 - 22859177
Alignment:
| Q |
149 |
cacattcgaagcacaaattttctttccatctgtagtagtgggggaat |
195 |
Q |
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| T |
22859131 |
cacatttgaaccacaaattttctttccatctgtagtagtgggggaat |
22859177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 22805924 - 22806027
Alignment:
| Q |
19 |
aatttgggacctactaagaaatatcctggaaccta-----gctacgaattattactgaaagaaacatcacttgacaaggtttcttaaattgcc-ttatca |
112 |
Q |
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| T |
22805924 |
aatttgggtcctagtaagaaatgtcctggaacataacttagctacgaatcatttctaaaagaaacatcacatgacatggttactaaaattgcctttatca |
22806023 |
T |
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| Q |
113 |
tctg |
116 |
Q |
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|||| |
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| T |
22806024 |
tctg |
22806027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 22810292 - 22810343
Alignment:
| Q |
52 |
tagctacgaattattactgaaagaaacatcacttgacaaggtttcttaaatt |
103 |
Q |
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| T |
22810292 |
tagctacgaattattacttaaagaaacatcacatgacatggttactaaaatt |
22810343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 22842942 - 22842983
Alignment:
| Q |
149 |
cacattcgaagcacaaattttctttccatctgtagtagtggg |
190 |
Q |
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| T |
22842942 |
cacatttgaaccacaaattttctttccaactgtagtagtggg |
22842983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 21150101 - 21150029
Alignment:
| Q |
32 |
ctaagaaatatcctggaacctagctacgaattattactgaaagaaacatcacttgacaaggtttcttaaattg |
104 |
Q |
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| T |
21150101 |
ctaagaaatgtccgggaacctagctacgaattattactaaaagaaacatcacatgacatggttactaaaattg |
21150029 |
T |
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