View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7605_high_4 (Length: 645)
Name: NF7605_high_4
Description: NF7605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7605_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 16 - 628
Target Start/End: Original strand, 26687687 - 26688299
Alignment:
| Q |
16 |
atcctaacccttagattaatctaatatctcaaacagttagactaacggttgagagatcaatacactcatccgatcccaataaatctcaacggttagatta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26687687 |
atcctaacccttagattaatctaatatctcaaacagttagactaacggttgagagatcaacacactcatcagatcccaataaatctcaacggttagatta |
26687786 |
T |
|
| Q |
116 |
atctggtgattaagatttggtttgaggatcaaagaggatcaaagcctataaagtccctccttttcactacaatcattgactagggatttagatttgatgt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26687787 |
atctggtgattaagatttggtttgaggatcaaagaggatcaaagcctataaagtccctccttttcactacaatcattgactagggatttagatttgatgt |
26687886 |
T |
|
| Q |
216 |
agtcacaaatctcaccgtttacatagtcaacacatcgatgaccgtaggattaagatcagatgatccatatttcaagttcagtattttagagttttnnnnn |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26687887 |
agtcacaaatctcaccgtttacatagtcaacacatcgatgaccgtaggattaagatcaaatgatccatatttcaagttcagtattttagagttttaaaaa |
26687986 |
T |
|
| Q |
316 |
nnnntcacaattagtttattttatacatcatacgatctcgattcatcgatgttttgacttcatgaatttgtgaccccagaaaatccaaatgcattgatta |
415 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26687987 |
aaaatcaaaattagtttattttatacatcatccgatctcgattcatcgatgttttgacttcatgaatttgtgaccacagaaaatccaaatgcattgatta |
26688086 |
T |
|
| Q |
416 |
gtttagtagtatttgatgtgataaacttgtagcaggttccaagaaattgtacctctaaatgcagcaaatgtattaggtcctcaaaacaagaaaatttcca |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26688087 |
gtttagtagtatttgatgtgataaacttgtagcaggttccaagaaattgtacctctaaatgcagcaaatgtattaggtcctcaaaacaagaaaatttcca |
26688186 |
T |
|
| Q |
516 |
tgaagtggaattccctcattggggcaacccttaacaataaaagacctatgaaggtagttgaagaagacaaaaaggcagaacctcaaaagatatatccatt |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26688187 |
tgaagtggaattccctcattggggcaacccttaacaataaaagacctatgaaggtagttgaagaagacaaaaaggcagaacctcaaaagatatatccatt |
26688286 |
T |
|
| Q |
616 |
gaaggaacaaact |
628 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26688287 |
gaaggaacaaact |
26688299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University