View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7605_high_6 (Length: 493)

Name: NF7605_high_6
Description: NF7605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7605_high_6
NF7605_high_6
[»] chr5 (12 HSPs)
chr5 (1-472)||(14391139-14391614)
chr5 (193-472)||(14397423-14397711)
chr5 (1-127)||(14397740-14397866)
chr5 (156-437)||(16024441-16024735)
chr5 (182-339)||(14393060-14393223)
chr5 (1-45)||(13857637-13857681)
chr5 (299-440)||(13882112-13882256)
chr5 (309-386)||(13883931-13884008)
chr5 (82-120)||(16024335-16024373)
chr5 (1-41)||(13866156-13866196)
chr5 (8-36)||(14358609-14358637)
chr5 (8-40)||(16021913-16021945)
[»] chr8 (2 HSPs)
chr8 (280-378)||(29625322-29625420)
chr8 (280-378)||(26202120-26202218)


Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 14391614 - 14391139
Alignment:
Q  1 aatcactacattaggcttgtttatgaagaatgacatacatataacttaactgtgctgcttgtacaaattgaaactatatatttttgtacctgctgaagtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14391614 aatcactacattaggcttgtttatgaagaatgacatacatataacttaactgtgctgcttgtacaaattgaaactatatatttttgtacctgctgaagtc 14391515  T
Q  101 taatcagcacataaaaggagacctttctatnnnnnnnnn----tgacaatgcctagccgatggcttcacacttggaagaaatcgctcagaaaatggcaat 196  Q
    ||||||||||||||||||||||||||||||             ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14391514 taatcagcacataaaaggagacctttctataaataaataaaaatgataatgcctagccgatggcttcacacttggaagaaatcgctcagaaaatggcaat 14391415  T
Q  197 gacattccatcttcttcaacatgggcatcagctattccttcaacttcaccttcagccttattatcatgttctccatcgtgtgctcttctcgagaacactc 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  14391414 gacattccatcttcttcaacatgggcatcagctattccttcaacttcaccttcagccttattatcatgttctccatcgcgtgctcttctcgagaacacta 14391315  T
Q  297 ctcaccatcattagattcgattccagaaacataaacattttcagaacctttttcattgtcctcggatgacctatgaggactttctacccccttcatcatt 396  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14391314 ctcaccatcattagattcgattccagaaacataaacatttttagaacctttttcattgtcctcggatgacctatgaggactttctacccccttcatcatt 14391215  T
Q  397 tccatataattttcttctctggcttcaccacaaatttcttccccctgcaaagttatctatttggagataacacacc 472  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14391214 tccatataattttcttctctggctttaccacaaatttcttccccctgcaaaattatctatttggagataacacacc 14391139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 193 - 472
Target Start/End: Complemental strand, 14397711 - 14397423
Alignment:
Q  193 caatgacattccatcttcttcaacatgggcatcagctattccttcaacttcaccttca------gccttattatcatgttctccatcgt-gtgctcttct 285  Q
    |||| ||||| ||||| ||||||||  ||||||||| ||||||||| | |||||||||      ||||||||||||| ||||||||||| | ||||||||    
T  14397711 caattacatttcatctccttcaacaccggcatcagccattccttcagcctcaccttcaccttgagccttattatcatattctccatcgtcgcgctcttct 14397612  T
Q  286 cgagaacactcctcaccatcattagattcgattccagaaacataaacattttcagaacctttttcattgtcctcggatgacctatgaggactttctaccc 385  Q
    ||||||||||||||||||| | |||||||  |||| ||||||  ||||||||||||||| |||||||||||||| |||||||||||||||||||||  ||    
T  14397611 cgagaacactcctcaccattagtagattcacttcctgaaacaacaacattttcagaaccattttcattgtcctccgatgacctatgaggactttct-tcc 14397513  T
Q  386 ccttcatcatt----tccatataattttcttctctggcttcaccacaaatttcttccccctgcaaagttatctatttggagataacacacc 472  Q
    |||||||||||    |||||||||||||||||||   |||||||||||| ||||| |||||||||| |||||||| |||||||||||||||    
T  14397512 ccttcatcattaagatccatataattttcttctcctccttcaccacaaacttctt-cccctgcaaaattatctatatggagataacacacc 14397423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 14397866 - 14397740
Alignment:
Q  1 aatcactacattaggcttgtttatgaagaatgacatacatataacttaactgtgctgcttgtacaaattgaaactatatatttttgtacctgctgaagtc 100  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  14397866 aatcacaacattaagcttgtttatgaagaatgacatacatataacttaactgtgctgcctgtacaaattgaaacaatatatttttgtacctgctgaagtc 14397767  T
Q  101 taatcagcacataaaaggagacctttc 127  Q
    ||| |||||||||||||||||||||||    
T  14397766 taaccagcacataaaaggagacctttc 14397740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 156 - 437
Target Start/End: Original strand, 16024441 - 16024735
Alignment:
Q  156 atggcttcacacttggaagaaatcgctcagaaaatggcaatgacattccatcttcttcaacat---gggcatcagctattccttcaacttcaccttca-- 250  Q
    ||||||||||| || ||||||| || ||||||||||| |||||  |||||||| |||||||||   | |||||||| ||||||||| |||||||||||      
T  16024441 atggcttcacatttagaagaaagcgttcagaaaatggtaatgatgttccatctccttcaacatcatgtgcatcagccattccttcagcttcaccttcact 16024540  T
Q  251 ----gccttattatcatgttctccatcgtg-tgctcttctcgagaacactcctcaccatcattagattcgattccagaaacataaacattttcagaacct 345  Q
        ||||||| ||||||||||||||| |  ||||||||| |||| |||||||| ||||||  ||||||  |||||||||||| ||| ||| ||||| |     
T  16024541 ttcagccttatcatcatgttctccatcatcatgctcttcttgagagcactcctctccatcagcagattcacttccagaaacatcaacgtttccagaagcg 16024640  T
Q  346 ttttcattgtcctcggatgacctatgaggactttctacccccttcatcatttccat----ataattttcttctctggcttcaccacaaatttcttc 437  Q
    |||||| || |||| |||||||| ||||||||||||  ||||||||||||   |||    |||||||||| |||||||||||||||||| ||||||    
T  16024641 ttttcactgccctctgatgacctctgaggactttct-tccccttcatcatcagcatctgcataattttctcctctggcttcaccacaaacttcttc 16024735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 182 - 339
Target Start/End: Complemental strand, 14393223 - 14393060
Alignment:
Q  182 tcagaaaatggcaatgacattccatcttcttcaacatgggcatcagctattc-----cttcaacttcaccttcagccttattatcatgttctccatcg-t 275  Q
    ||||||||||||||||||||||||||| |||||||| |||||| ||| ||       ||||| |||||| |||||||||| ||||| ||||||||||  |    
T  14393223 tcagaaaatggcaatgacattccatctccttcaacaggggcattagccatcatttagcttcaccttcactttcagccttactatcacgttctccatccct 14393124  T
Q  276 gtgctcttctcgagaacactcctcaccatcattagattcgattccagaaacataaacattttca 339  Q
     |||| ||||||||||||||||||||||||  || ||||| ||||| |||||| ||||||||||    
T  14393123 atgcttttctcgagaacactcctcaccatctgtatattcgcttccaaaaacatcaacattttca 14393060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13857637 - 13857681
Alignment:
Q  1 aatcactacattaggcttgtttatgaagaatgacatacatataac 45  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  13857637 aatcacgacattaggcttgtttatgaagaatgacatacatataac 13857681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 299 - 440
Target Start/End: Original strand, 13882112 - 13882256
Alignment:
Q  299 caccatcattagattcgattccagaaacataaacattttcagaacctttttcattgtcctcggatgacctatgaggactttctacccccttcatcat--- 395  Q
    |||||||| |||||| | |||||||||||| | ||||| |||||   |||||  |||||||  ||||||| ||||||||||||  ||||||||||||       
T  13882112 caccatcaatagatttgcttccagaaacatcagcatttgcagaagtattttcgctgtcctccaatgacctctgaggactttct-tccccttcatcatcag 13882210  T
Q  396 -ttccatataattttcttctctggcttcaccacaaatttcttcccc 440  Q
      ||||| || |||||| |||||||||||||||||| |||||||||    
T  13882211 catccatgtagttttctcctctggcttcaccacaaacttcttcccc 13882256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 13883931 - 13884008
Alignment:
Q  309 agattcgattccagaaacataaacattttcagaacctttttcattgtcctcggatgacctatgaggactttctacccc 386  Q
    ||||||| |||||||||||| ||||||||||||| | |||| | | ||||| |||||||| |||||||| ||| ||||    
T  13883931 agattcgcttccagaaacatcaacattttcagaagcattttaactatcctccgatgacctctgaggactctcttcccc 13884008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 16024335 - 16024373
Alignment:
Q  82 ttttgtacctgctgaagtctaatcagcacataaaaggag 120  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  16024335 ttttgtacctgatgaagtctaatcagcacatagaaggag 16024373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13866156 - 13866196
Alignment:
Q  1 aatcactacattaggcttgtttatgaagaatgacatacata 41  Q
    |||||| ||||| ||| ||||||||||||||||||||||||    
T  13866156 aatcacgacattgggcctgtttatgaagaatgacatacata 13866196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 14358609 - 14358637
Alignment:
Q  8 acattaggcttgtttatgaagaatgacat 36  Q
    |||||||||||||||||||||||||||||    
T  14358609 acattaggcttgtttatgaagaatgacat 14358637  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 16021913 - 16021945
Alignment:
Q  8 acattaggcttgtttatgaagaatgacatacat 40  Q
    |||||||||||||| ||||||||||||||||||    
T  16021913 acattaggcttgttaatgaagaatgacatacat 16021945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 378
Target Start/End: Original strand, 29625322 - 29625420
Alignment:
Q  280 tcttctcgagaacactcctcaccatcattagattcgattccagaaacataaacattttcagaacctttttcattgtcctcggatgacctatgaggactt 378  Q
    |||||||||||||| ||||||||||||  ||| ||| | |||||||||| | |||| |||||  | |||||| |||| || ||||| ||||||||||||    
T  29625322 tcttctcgagaacattcctcaccatcagcagactcggtaccagaaacatcaccattctcagatgcattttcactgtcgtctgatgatctatgaggactt 29625420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 378
Target Start/End: Original strand, 26202120 - 26202218
Alignment:
Q  280 tcttctcgagaacactcctcaccatcattagattcgattccagaaacataaacattttcagaacctttttcattgtcctcggatgacctatgaggactt 378  Q
    |||||||||||||| ||||||||||||  ||| ||  | |||||||||| | |||| |||||  | |||||| |||| || ||||| ||||||||||||    
T  26202120 tcttctcgagaacattcctcaccatcagcagactcagtaccagaaacatcaccattctcagatgcattttcactgtcgtctgatgatctatgaggactt 26202218  T

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