View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7605_high_7 (Length: 464)
Name: NF7605_high_7
Description: NF7605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7605_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 2 - 450
Target Start/End: Complemental strand, 4363483 - 4363035
Alignment:
| Q |
2 |
catagcaaatgattaatatattgaaatgtcaaccattgattttctcacatcataggaggaaaattcttcctacttctattcctctaaagtctttaaaacg |
101 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4363483 |
catagcaaatcattaatatattgaaatgtcaaccattgattttctgacatcataggaggaaaattcttcctacttctattcctctaaagtctttaaaacg |
4363384 |
T |
|
| Q |
102 |
atagcaaattgtgtcactttgtcatcttccagggatatcaccactgcgtttcctagttttattttcaaatcagaagctggaaattgagaagaaaatgttt |
201 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4363383 |
ataacaaattgtgtcactttgtcatcttccagggatatcaccactgcgtttcctagttttattttcaaatcagaagctggaaattgagaagaaaatgttt |
4363284 |
T |
|
| Q |
202 |
tattgtctatttgaggcaaatgattggattggttattgctgtaaatggtaacaacattggtaatttgttgacaaacaatcatggtaagcaacattgcata |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4363283 |
tattgtctatttgaggcaaatgattggattggttattgctgtaaatggtaacaacattggtaatttgttgacaaacaatcatggtaagcaacattgcata |
4363184 |
T |
|
| Q |
302 |
gttcctgcaatcataccctaaagacaccaagtttttatgttttgtatgtttgaaggaacattttttgaaccaacaaaaatatttgtagcctataattcat |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4363183 |
gttcctgcaatcataccctaaagacaccaagtttttatgttttgtatgtttgaaggaacattttttgaaccaacagaaatatttgtagcctataattcat |
4363084 |
T |
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| Q |
402 |
aggtttgattacatgtttgttcacataaccaatgtttttatgcattttg |
450 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4363083 |
aggtttgattacatgtttgttcacataaccaatgtttttatgcattttg |
4363035 |
T |
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