View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7605_high_8 (Length: 409)
Name: NF7605_high_8
Description: NF7605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7605_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 35630790 - 35631162
Alignment:
| Q |
19 |
gctttgtcaccgtgtctgaccgaagatccacatttctagttaccattttctctacaactacaacaaaccaaaaagtaaaaatcaatagccattacaagtt |
118 |
Q |
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| T |
35630790 |
gctttgtcaccgtgtctgaccgaagatccacatttctagttaccattttctctacaactacaacaaaccaaaaagtaaaaatcaatagccattacaagtt |
35630889 |
T |
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| Q |
119 |
catcgcaatttcaaaattagattccccgcattcacacagttaagacatagatgatatagatgacagttccatcaaagattggacagtccaaattcatact |
218 |
Q |
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| T |
35630890 |
catcgcaatttcaaaattagattccccgcattcacacagttaagacatggatgatatagatgacagttccatcaaagattggacagtccaaattcatact |
35630989 |
T |
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| Q |
219 |
tggtattttgaattataaaatatacttttttggactgtctaatcttgatcaaatgttcaagaatgtcatgcatgaatgcgggaacccttgacgactgcat |
318 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |
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| T |
35630990 |
tggtattttgaattataaaatataattttttggactgtctaatcttgatcaaatgttcacgaatgtcctgcatgaatgcgggaacccttgacaactgcat |
35631089 |
T |
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| Q |
319 |
aggatccaaattccaaattttcttctgtnnnnnnnnnnnntgaaatcaccaattttagagtgacatgtttctg |
391 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35631090 |
aggatccgaattccaaattttcttctgtaaaaagaaaaaatgaaatcaccaattttagagtgacatgtttctg |
35631162 |
T |
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