View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7605_low_10 (Length: 341)
Name: NF7605_low_10
Description: NF7605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7605_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 149 - 333
Target Start/End: Complemental strand, 47176545 - 47176353
Alignment:
| Q |
149 |
cctgcaaaaaatggccatctagtatcaa-tatccttttaaaaattatatatat--------caagtatgcaggatatgttgtcggcccttgnnnnnnnaa |
239 |
Q |
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| T |
47176545 |
cctgcaaaaaatggccatctagtatcaagtatccttttaaaaaatatatatatatatatatcaagtatgcaggatatgttgtcggcccttgtttttttaa |
47176446 |
T |
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| Q |
240 |
agagaaaaaccctgtannnnnnnnaagttctctttctccttcatttataagagaatgatggtttttgacttagaataatcatttttgttcatct |
333 |
Q |
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| T |
47176445 |
agagagaaaccctgtattttttt-aagttcaatttctccttcatttataagagaatgatggtttttgacttagaataatcatttttgttcatct |
47176353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 47176632 - 47176545
Alignment:
| Q |
22 |
ctcacacattatgcatggtcaattttatttaggagagtaattgatgattctaatataatgataacatatagtgattttaaaggccgtc |
109 |
Q |
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| T |
47176632 |
ctcacacattatgcatggtcaattttatttaggagagtaattgatgattctaatataatgataacatatagtgattttaaaggccgtc |
47176545 |
T |
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