View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7605_low_11 (Length: 290)
Name: NF7605_low_11
Description: NF7605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7605_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 29338699 - 29338434
Alignment:
| Q |
20 |
acctgtacattattcggttaaataatttgagttgatcctaaatttctttgatgcatatgttaatgagtcgcatcaattttattagataaatttacttatt |
119 |
Q |
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| T |
29338699 |
acctgcacattattcggttaaataatttgagttgatcctaaatttcttttatgcatatgttaatgagtcgcatcaattttattagataaatttacttatt |
29338600 |
T |
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| Q |
120 |
ctcttttgatggaatgaggtgtaaactt-ggggtggtaattaaatggaatgcatatgtaaggatagtggatggaacagatgcttacttgtgaatatgtgc |
218 |
Q |
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| T |
29338599 |
ctcttttgatggaatgaggtgtaaactttggggtggtaattaaatggaatgcatatgtaaggatagtggatggaacagatgcttacttgtgaatatgtgc |
29338500 |
T |
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| Q |
219 |
cgaaggtttgtttcttaatgtttccgtcatcaacctttctttctttgatctttctctctatattct |
284 |
Q |
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| T |
29338499 |
cgaaggtttgtttcttaatgtttcagtcatcaacctttctttctttgatctttctctctatcttct |
29338434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 29352071 - 29351988
Alignment:
| Q |
20 |
acctgtacattattcggttaaataatttgagttgatcctaaatttctttgatgcatatgttaatgagtcgcatcaattttatta |
103 |
Q |
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| T |
29352071 |
acctatacattattcggttaaataatttgacttgatccttactttcttttatgcatatatgaatgagtcacataaattttatta |
29351988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 29351972 - 29351900
Alignment:
| Q |
98 |
ttattagataaatttacttattctcttttgatggaatgaggtgtaaacttggggtggtaattaaatggaatgcatatgta |
177 |
Q |
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| T |
29351972 |
ttattagataaattaacttttt-tcttttaatggaatgaggtgtaaac------tggtagttaaatggaatgcatatgta |
29351900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 29351737 - 29351704
Alignment:
| Q |
245 |
tcatcaacctttctttctttgatctttctctcta |
278 |
Q |
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| T |
29351737 |
tcatcatcctttctttctttgatctttctctcta |
29351704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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