View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7605_low_12 (Length: 225)
Name: NF7605_low_12
Description: NF7605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7605_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 2489971 - 2489783
Alignment:
| Q |
18 |
aagaatacgatcctctgatttcgaggtaagtccatcccaattggacatgaattcattctttattttccgcatggcttcatgttccccaactcttgttcgc |
117 |
Q |
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| T |
2489971 |
aagaatacgatcctctgatttcgaggtaagtccatcccaattggacatgaattcattctttattttccgcatggcttcatgttccccaactcttgttcgc |
2489872 |
T |
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| Q |
118 |
tgcccaagcatactgtcaacctcatcgacaaatataatagttggggagaccttggctgccagtgtgaataaagctcggacattcttctc |
206 |
Q |
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| T |
2489871 |
tgcccaagcatactgtcaacctcatcgacaaatataatagttggggagaccttggctgccagtgtgaataaagctcggacattcttctc |
2489783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 52 - 206
Target Start/End: Original strand, 41591049 - 41591203
Alignment:
| Q |
52 |
tcccaattggacatgaattcattctttattttccgcatggcttcatgttccccaactcttgttcgctgcccaagcatactgtcaacctcatcgacaaata |
151 |
Q |
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| T |
41591049 |
tcccaatgggacataaattcattctttattttccgcatggcttcatgctccccaactcttgttcgttgcccaagcatgctatcaacctcatcgacaaata |
41591148 |
T |
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| Q |
152 |
taatagttggggagaccttggctgccagtgtgaataaagctcggacattcttctc |
206 |
Q |
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| T |
41591149 |
taatagttggggagactttggatgcaagtgtgaataaagcgcgaacattcttctc |
41591203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 46 - 203
Target Start/End: Original strand, 11094442 - 11094599
Alignment:
| Q |
46 |
agtccatcccaattggacatgaattcattctttattttccgcatggcttcatgttccccaactcttgttcgctgcccaagcatactgtcaacctcatcga |
145 |
Q |
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||||||||||||| | |||||||||||| || || |||| |||||| |||||||| || ||||| || ||||| || ||||| |||||||| ||||||| |
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| T |
11094442 |
agtccatcccaatgtgtcatgaattcatttttaatcttcctcatggcctcatgttctccgactctagtacgctgaccgagcatgctgtcaacttcatcga |
11094541 |
T |
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| Q |
146 |
caaatataatagttggggagaccttggctgccagtgtgaataaagctcggacattctt |
203 |
Q |
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| T |
11094542 |
cgaatataatagtcggagcaaccttagctgctagcgtgaacaaagctcggacattctt |
11094599 |
T |
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