View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7605_low_2 (Length: 762)

Name: NF7605_low_2
Description: NF7605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7605_low_2
NF7605_low_2
[»] chr5 (1 HSPs)
chr5 (19-659)||(13721575-13722215)
[»] chr8 (1 HSPs)
chr8 (42-147)||(28600846-28600951)


Alignment Details
Target: chr5 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 19 - 659
Target Start/End: Complemental strand, 13722215 - 13721575
Alignment:
Q  19 aacatggagaataacaatggaaattggatgagatttccatttcttgagtgcccaattcaaagtattaaatccatcttgtgcatcatcaccaacagcaaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13722215 aacatggagaataacaatggaaattggatgagatttccatttcttgagtgcccaattcaaagtattaaatccatcttgtgcatcatcaccaacagcaaca 13722116  T
Q  119 tagattttctctaattgtgttgcatccattgtctagattgtgttggaagaggtctagtgtgaaaataaccttataaaaggaaacaaagaatgttggtatg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13722115 tagattttctctaattgtgttgcatccattgtctagattgtgttggaagaggtctagtgtgaaaataaccttataaaaggaaacaaagaatgttcgtatg 13722016  T
Q  219 ttatcatcaaatttcaaggctttcatttgtgaatttttt-ataagtgtttggtttgaaactttatattattataatataaatgttt-----ttatcatga 312  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||      |||||||||    
T  13722015 ttatcatcaa-tttcaaggctttcatttgtgaatttttttataagtgtttggtttgaaactttaaattattataatataaatgttactccattatcatga 13721917  T
Q  313 attgaaaaagaagagtctgaaggaaacggccaggtttggacttttgtgtatggcatgtcatgattggtaaatggaactggggtcatatctatttgcaatt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13721916 attgaaaaagaagagtctgaaggaaacggccaggtttggacttttgtgtatggcatgtcatgattggtaaatggaactggggtcatatctatttgcaatt 13721817  T
Q  413 tctatggtaatacttataattcacttttgtcttctatagattaaaataaataagccgtgtgaaattactagcttcacaacgattcaatgattatcatttt 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13721816 tctatggtaatacttataattcacttttgtcttctatagattaaaataaataagccctgtgaaattactagcttcacaacgattcaatgattatcatttt 13721717  T
Q  513 tgaactacttcactgcataaattgtacaatactgagaggactgagtgaagtatgcactttctcaacaatggattcaattcagcaacgtataaaaagtatg 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     ||||||||||||||||||    
T  13721716 tgaactacttcactgcataaattgtacaatactgagaggactgagtgaagtatgcactttctcaacaatggcttcaa-----caacgtataaaaagtatg 13721622  T
Q  613 tttttaacctttattcttcggcttataaaaaatagattacgcaaata 659  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||    
T  13721621 tttttaacctttattcttcggcctatgaaaaatagattacgcaaata 13721575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 28600846 - 28600951
Alignment:
Q  42 ttggatgagatttccatttcttgagtgcccaattcaaagtattaaatccatcttgtgcatcatcaccaacagcaacatagattttctctaattgtgttgc 141  Q
    |||||||||| |||||||||||||| ||||||| ||| || | ||||||||||    ||||||  ||||| |||||||| ||||| || | ||| ||||     
T  28600846 ttggatgagaattccatttcttgagagcccaatccaatgtttgaaatccatctaacacatcatagccaactgcaacatatattttttcaatttgagttgt 28600945  T
Q  142 atccat 147  Q
    ||||||    
T  28600946 atccat 28600951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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