View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7605_low_3 (Length: 709)
Name: NF7605_low_3
Description: NF7605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7605_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 628; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 1 - 697
Target Start/End: Original strand, 2489951 - 2490644
Alignment:
| Q |
1 |
aaatcagaggatcgtattcttgtcctcgctgcaaccaataggccctttgacttggatgaagcaattattagacgatttgaaagaaggtacctctactagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489951 |
aaatcagaggatcgtattcttgtcctcgctgcaaccaataggccctttgacttggatgaagcaattattagacgatttgaaagaaggtacctctactagt |
2490050 |
T |
|
| Q |
101 |
tctacatgtacaatgaattttttgtgctctttcttagtacctgaagagtgctagcaatacactttgtaccatacttttcaacacaatctttgctattagt |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490051 |
tcgacatgtacaatgaattttttgtgctctttcttagtacctgaagagtgctagcaatacactttgtaccatacttttcaacacaatctttgctattagt |
2490150 |
T |
|
| Q |
201 |
tcaaattcatgtggacctgttttcaaaacccgttagtttttcaatcaatgatataggttatgttgagaaagagtgtctaatagtgtgtactgttagcatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490151 |
tcaaattcatgtggacctgttttcaaaacccattagtttttcaatcaatgatataggttatgttgagaaagagtgtctaatagtgtgtactgttagcatt |
2490250 |
T |
|
| Q |
301 |
catacnnnnnnnnnnngtggtggggcgaggggcacataaaaaatcaaaatctgcaatatattgttttgatggcatatttgtgtgtacacaacaacaatca |
400 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490251 |
catactttttttttt-gtggtggggcgaggggcacataaaaaatcaa--tttgcaatatattgttttgatggcatatttgtgtgtacacaacaacaatca |
2490347 |
T |
|
| Q |
401 |
gaataccctgaaattcaatagtattttaagcacgtttaatcactatatcgttcatctttgattaccaggattatggttgggctaccgtctgcagagaaca |
500 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2490348 |
gaataccctgaaattccatagtattttaagcacgtttaatcactatatcgttcatctttgattaccaggattatggttgggctaccgtccgcagagaaca |
2490447 |
T |
|
| Q |
501 |
gagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaaggatatagtggaagtga |
600 |
Q |
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|
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|
| T |
2490448 |
gagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaaggatatagtggaagtga |
2490547 |
T |
|
| Q |
601 |
tctgaaggtttttctctattattgttttcctatggccgtaacttaactatcgtgttacaatctacaaatgcttttcttatgtttagtttctgatgtc |
697 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490548 |
tctgaaggtttttctctattattgttttcctatggccgtaacttaactatcgtgttacaatctacaaatgcttttcttatgtttagtttctgatgtc |
2490644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 41591005 - 41590948
Alignment:
| Q |
31 |
gcaaccaataggccctttgacttggatgaagcaattattagacgatttgaaagaaggt |
88 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| || ||||||||||| |||| |
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|
| T |
41591005 |
gcaaccaataggccatttgacttggatgaagctattataaggcgatttgaaaggaggt |
41590948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 611
Target Start/End: Complemental strand, 41589925 - 41589784
Alignment:
| Q |
470 |
attatggttgggctaccgtctgcagagaacagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcg |
569 |
Q |
| |
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|||||||| || ||||| |||| |||||||| ||||| || || ||||| |||||| | ||||| |||||| || | | |||||||||||||||| | |
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| T |
41589925 |
attatggtaggactaccatctgttgagaacagggaaaagattttaaggactcttttgtcaaaagaaaaggtggacaaagaaattgattttaaggaacttg |
41589826 |
T |
|
| Q |
570 |
caactatgactgaaggatatagtggaagtgatctgaaggttt |
611 |
Q |
| |
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| || ||||| || ||||||| ||||||||| | ||||||| |
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| T |
41589825 |
cgaccatgacagacggatataccggaagtgatttaaaggttt |
41589784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 570 - 610
Target Start/End: Original strand, 45989453 - 45989493
Alignment:
| Q |
570 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
610 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||| |
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| T |
45989453 |
caactatgacagaaggatatagtggaagtgatcttaaggtt |
45989493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 570 - 610
Target Start/End: Original strand, 44936073 - 44936113
Alignment:
| Q |
570 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
610 |
Q |
| |
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|||||||||| ||||||||||| ||||||||||| |||||| |
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| T |
44936073 |
caactatgacagaaggatatagcggaagtgatcttaaggtt |
44936113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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