View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7605_low_4 (Length: 653)
Name: NF7605_low_4
Description: NF7605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7605_low_4 |
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| [»] scaffold0250 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 18 - 643
Target Start/End: Original strand, 36478600 - 36479228
Alignment:
| Q |
18 |
gttacgtgcttaaggagaagtttaagttgatcaaatcggggcttaaactatggaatagtaatcatgttcaaaatttgtcagggaggatttatgctattaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36478600 |
gttacgtgcttaaggagaagtttaagttgatcaaatcggcgcttaaactatagaataataatcatgttcaaaatttgtcagggaggatttctgctattaa |
36478699 |
T |
|
| Q |
118 |
ggagagaatagctttgttagattgtaaaggggaaattgagttgttttcggatgtgagtctgaggagttacgtgggctgatgggtaatttacatttttcat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | |||| || |
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| T |
36478700 |
ggagagaatagctttgttagattgtaaaggggaaattgagttgttttcggatgcgagtctgaggagttacgtgggctgatgggtgatttatagtttttat |
36478799 |
T |
|
| Q |
218 |
ctcgtataaatactagtatttgttggcaataatctaggttacttttgctaaaagaaagagattcgaactataagttttttcatggcattacctctagtca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36478800 |
ctcgtataaatactagtatttgttggcaataatctaggctacttttgctaaaagaaagagattcgaactataagttttttcatggcattacttctagtca |
36478899 |
T |
|
| Q |
318 |
tc---gacagggcaataatcttaattctattattgttgaaggcgctcgggtggaaggagtgtctaatgtgtgtagtgcaattttttctcattttgcggct |
414 |
Q |
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|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
36478900 |
tcatcggcagggcaataatcttaattctattattgttgaaggcgctcgggtggaaggagtgtctaatgtgtgtactgcaattttttctcattttgtggct |
36478999 |
T |
|
| Q |
415 |
cattttaaggcgggtaatgttgatagaccacttgtggatgatcttcagtttcatactatatcgcctatggacggagtgaatttgattaagctttttagtc |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |||||||| |
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| T |
36479000 |
cattttaaggcgggtaatgttgatagaccacttgtggatgatcttcattttcatactatattgcctatggatggagtgaatttgattaaggattttagtc |
36479099 |
T |
|
| Q |
515 |
tagaggaagggaaagttgcagtctgggattgtgacggttttaaaagtcctgggtccggatgacattaactttagttttataaaagagttttggcctgaat |
614 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| | ||||| |||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
36479100 |
tagaggaagggaaagttgcagtctgggattgtgacagttttaaaaattctgggcccggatgacattaattttagttttataaaggagttttggcctgaat |
36479199 |
T |
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| Q |
615 |
taaaaggtgatctcatgaggttcatttca |
643 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
36479200 |
taaaaggtgatctcatgaggttcatttca |
36479228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 289 - 461
Target Start/End: Complemental strand, 13577 - 13405
Alignment:
| Q |
289 |
aagttttttcatggcattacctctagtcatcgacagggcaataatcttaattctattattgttgaaggcgctcgggtggaaggagtgtctaatgtgtgta |
388 |
Q |
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||||||||||| ||||||| || |||| ||||| ||| |||||||||||| |||| |||||| || | ||||||| |||||||| || ||| ||| |
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| T |
13577 |
aagttttttcacggcattatgtcaagtcgtcgactgggtaataatcttaatcatattgatgttgatggagactgggtggagggagtgtcaaaggtgcgta |
13478 |
T |
|
| Q |
389 |
gtgcaattttttctcattttgcggctcattttaaggcgggtaatgttgatagaccacttgtggatgatcttca |
461 |
Q |
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||| |||| |||||||||||||||||||||||| | ||||||||||||||| | ||||||||| |||| |
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| T |
13477 |
gtgttgttttctctcattttgcggctcattttaagactctcaatgttgatagaccagtcgtggatgattttca |
13405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 471
Target Start/End: Complemental strand, 26133358 - 26133258
Alignment:
| Q |
370 |
ggagtgtctaatgtgtgtagtgcaattttttctcattttgcggctcattttaaggcgggtaatgttgatagaccacttgtggatgatcttcagtttcata |
469 |
Q |
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||||||||||||||| |||||| |||||| |||||| ||| | |||||||||||| ||||||||| |||| | ||||||||||| |||| |||| || |
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| T |
26133358 |
ggagtgtctaatgtgcgtagtgtcatttttgatcattt-gcgacccattttaaggcgtgtaatgttgttagatctgttgtggatgattttcattttcgta |
26133260 |
T |
|
| Q |
470 |
ct |
471 |
Q |
| |
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|| |
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| T |
26133259 |
ct |
26133258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 607
Target Start/End: Complemental strand, 8718169 - 8718098
Alignment:
| Q |
535 |
gtctgggattgtgacggttttaaaagtcctgggtccggatgacattaactttagttttataaaagagttttgg |
607 |
Q |
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| T |
8718169 |
gtctgggattgcgatagttttaaaagtcct-ggtccggatggcgttaattttagtttcataaaggagttttgg |
8718098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 12609384 - 12609427
Alignment:
| Q |
203 |
atttacatttttcatctcgtataaatactagtatttgttggcaa |
246 |
Q |
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| T |
12609384 |
atttacattctttatctcgcataaatactagtatttgttggcaa |
12609427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 548
Target Start/End: Original strand, 32465866 - 32465967
Alignment:
| Q |
447 |
tgtggatgatcttcagtttcatactatatcgcctatggacggagtgaatttgattaagctttttagtctagaggaagggaaagttgcagtctgggattgt |
546 |
Q |
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||||||| |||||||||||| ||| | | | |||||| || |||||||||||||| | |||| || | ||||| ||||||| |||||| ||||||||| |
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| T |
32465866 |
tgtggataatcttcagtttcgtacattgactcttatggaaggggtgaatttgattaaaccttttcgtatggaggatgggaaagctgcagtttgggattgt |
32465965 |
T |
|
| Q |
547 |
ga |
548 |
Q |
| |
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|| |
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| T |
32465966 |
ga |
32465967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 608
Target Start/End: Original strand, 3128201 - 3128273
Alignment:
| Q |
535 |
gtctgggattgtgacggttttaaaagtcctgggtccggatgacattaactttagttttataaaagagttttggc |
608 |
Q |
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|||||||||||||| ||||||||||||| || ||||||| |||| |||||||||||||| |||||||||| |
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| T |
3128201 |
gtctgggattgtgatagttttaaaagtccaggc-ccggatggtgttaattttagttttataaaggagttttggc |
3128273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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