View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7606_high_2 (Length: 493)
Name: NF7606_high_2
Description: NF7606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7606_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 2 - 485
Target Start/End: Original strand, 37086175 - 37086660
Alignment:
| Q |
2 |
ttccaagatgcttcaacttctttttcttaaatttggtgattcaacaaataaacctgcctaattctaccatatggaaaaaccaaatcaagccaacattaga |
101 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37086175 |
ttccgagatgcttcaacttctttttcttaaatttggtgattcaacaaataaacctgcctaattctaccatatgaaaaaaccaaatcaagccaacattaga |
37086274 |
T |
|
| Q |
102 |
ttccatgcaccttctttcaaattattaatgataatcattacatcgtcaaaaatacatgagtcacaaaagaagaacttggattcatagatgcttatctttt |
201 |
Q |
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| T |
37086275 |
ttccatgcaccttctttcaaattattaatgataatcattacatcatcaaaaatacatgagtcacaaaagaagaacttggattcatagatgcttatctttt |
37086374 |
T |
|
| Q |
202 |
atcatttgttcactgtgattatgactttattatggcaagttaggatccaaattaggaatgcaaaatgccctcactttcaaaagctagtcctcatttaaca |
301 |
Q |
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| T |
37086375 |
atcatttgttcactgtgattatgactttattatggcaagttaggatccaaattaggaatgcaaaatgccctcactttcaaaagctagtcctcatttaaca |
37086474 |
T |
|
| Q |
302 |
cgtaccacacaatcatagcctatataattccaaatcatggggaacacaaatttgtacattcagcattttgggccacataacataacaagtggacctatta |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37086475 |
cgtaccacacaatcatagcctatataattccaaatcatggggaacacaaatttgtacattcagcattttgggccacataacataacaagtggacctatta |
37086574 |
T |
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| Q |
402 |
caaggtagttaaatgccaaagcatatcatac--nnnnnnnnncaactctatcatttcaaatcttattcttctaccttacattcttc |
485 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37086575 |
caaggtagttaaatgccaaagcatatcatacaaaaaaaaaaacaactctatcatttcaaatcttattcttctaccttatattcttc |
37086660 |
T |
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