View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7606_high_4 (Length: 342)
Name: NF7606_high_4
Description: NF7606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7606_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 36944925 - 36944710
Alignment:
| Q |
25 |
tgaagtagtgtttggaaatgaagatgtggttggaatttgacaagaaaaattagttttatgatttgatgagacaacgtttaaggaagnnnnnnnnnnggtg |
124 |
Q |
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| T |
36944925 |
tgaagtactgtttgcaaatgaa--tgtggttggaatttgacaagaaaaattagttttatgatttgatgagacaacatttaaggaagaaaaaaaaaaagt- |
36944829 |
T |
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| Q |
125 |
agaattgcaagagtgtcattctttgataacatattttggtgggttagagttagaggaagtag---tagtttgtgggggtttgaagaaactctatcaatta |
221 |
Q |
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| T |
36944828 |
agagttgcaagagtgtcattctttgataacatattttggtgggttagagttagaggaagtagtagtagtttgt-ggggttagaagaaactctatcaatta |
36944730 |
T |
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| Q |
222 |
aagcaatttcactacatatt |
241 |
Q |
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| T |
36944729 |
aatcaacttcacttcatatt |
36944710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 36941807 - 36941574
Alignment:
| Q |
1 |
tcaggtgaacttaactcttatgggtgaagtagtgtttggaaatgaag----atgtggttggaatttgacaagaaaaa--ttagttttatgatttgatgag |
94 |
Q |
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| T |
36941807 |
tcaggtgaacttaactccaa-ggatgaagtactgtttgcaaatgaattaatatgtggttagaatttgacaaaaaaaaaattagttttatgatttgatgag |
36941709 |
T |
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| Q |
95 |
acaacgtttaaggaagnnnnnnnnnnggtgagaattgcaagagtgtcattctttgataacatattttggtgggttagagttagaggaagtag---tagtt |
191 |
Q |
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| T |
36941708 |
acaacatttaagg---------------tgggaattgcaagagtgtcattctttaataacatattttggtgggttagagttagaggaagtagtagtagtt |
36941624 |
T |
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| Q |
192 |
tgtgggggtttgaagaaactctatcaattaaagcaatttcactacatatt |
241 |
Q |
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| T |
36941623 |
tgtgggggtcagaagaaactctatcaattaaagcaatttcactgcatatt |
36941574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 36943834 - 36943780
Alignment:
| Q |
249 |
aagtgttgactagacggagttagaggcaacatgccaactagacaagttagttagagt |
305 |
Q |
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| T |
36943834 |
aagtgttgacta-acatagttagaggcaacatgc-aactagacaagttagtcagagt |
36943780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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