View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7606_high_5 (Length: 303)
Name: NF7606_high_5
Description: NF7606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7606_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 120 - 299
Target Start/End: Original strand, 31041884 - 31042061
Alignment:
| Q |
120 |
gtgactccatgcatgaaacacaagtttttgaaattcgtcgagcttgactaattgtaatattcttatggtttgaacttgaaaaagttgacgattgaacgaa |
219 |
Q |
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| T |
31041884 |
gtgactccatgaatgaagcacaagtttt-gaaattcgttgagcttgactaattgtaat-ttcttatggtttgaacttgaaaaagttgacgattgaacgaa |
31041981 |
T |
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| Q |
220 |
tcaaacttcttgtgccccaaattatacacacgaaaacaaatattatgatatgtatacccacattttaatacctccaaact |
299 |
Q |
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| T |
31041982 |
tcaaacttcttgtgccccaaattatacacacgaaaacaaatattatgatatgtatacccacattttaatacctccaaact |
31042061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 31036601 - 31036844
Alignment:
| Q |
22 |
attgatgatatccttattacaacaagtttctttgcttgagatttgaagatgtgaatggtatgttttggaagaagcaaacnnnnnnnnnnnnnnnnnnn-- |
119 |
Q |
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| T |
31036601 |
attgatgatatccttattacaacaagtttctttgcttgagatttgaagatgtgaatggtatgttttggaacaagcaaacatatatatggatatatatata |
31036700 |
T |
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| Q |
120 |
gtgactccatgcatgaaacacaagtttttgaaattcgtcgagcttgactaattgtaatattcttatggtttgaacttgaaaaagttgacgattgaacgaa |
219 |
Q |
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| T |
31036701 |
gtgactccatgcatgaagaacgagtttttgaaattcgtttagcttgactaattgcaat--tcttatggtttgaacttgaaa--gttgacaattgaacgaa |
31036796 |
T |
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| Q |
220 |
tcaaacttcttgtgccccaaattatacacacgaaaacaaatattatga |
267 |
Q |
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| T |
31036797 |
tcaaacttcttgtgcaccaaactatacacacgaaaacaagtattatga |
31036844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 31029631 - 31029865
Alignment:
| Q |
22 |
attgatgatatccttattacaacaagtttctttgcttgagatttgaagatgtgaatggtatgttttggaagaagcaaacnnnnnnnnnnnnnnnnnnn-- |
119 |
Q |
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| T |
31029631 |
attgatgatatccttattacaacaagtttctttgcttgagatttgaagatgtgaatggtatgttttggaacaagcaaacatatatatggatatatatata |
31029730 |
T |
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| Q |
120 |
gtgactccatgcatgaaacacaagtttttgaaattcgtcgagcttgactaattgtaatattcttatggtttgaacttgaaaaagttgacgattgaacgaa |
219 |
Q |
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| T |
31029731 |
gtgactccatgcatgaagaacgagtttttgaaattcgtttagcttgactaattgcaat--tcttatggtttgaacttgaaa--gttgacaattgaacgaa |
31029826 |
T |
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| Q |
220 |
tcaaacttcttgtgccccaaattatacacacgaaaacaa |
258 |
Q |
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| T |
31029827 |
tcaaacttcttgtgcaccaaactatacacacgaaaacaa |
31029865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 43 - 258
Target Start/End: Original strand, 31026799 - 31027012
Alignment:
| Q |
43 |
acaagtttctttgcttgagatttgaagatgtgaatggtatgttttggaagaagcaaacnnnnnnnnnnnnnnnnnnngtgactccatgcatgaaacacaa |
142 |
Q |
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| T |
31026799 |
acaagtttctttgcttgagatttgaagatgtgaatggtatgttttggaacaagcaaacatatatatggatatatatagtgactccatgcatgaagtacga |
31026898 |
T |
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| Q |
143 |
gtttttgaaattcgtcgagcttgactaattgtaatattcttatggtttgaacttgaaaaagttgacgattgaacgaatcaaacttcttgtgccccaaatt |
242 |
Q |
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| T |
31026899 |
gtttttgaaattcgtttagtttgactaactgtaatattcttatggtttgaacttg--aaagttgacaattgaacgaatcaaacttcttgtgcaccaaact |
31026996 |
T |
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| Q |
243 |
atacacacgaaaacaa |
258 |
Q |
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| T |
31026997 |
atacacacgaaaacaa |
31027012 |
T |
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