View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7606_low_1 (Length: 694)

Name: NF7606_low_1
Description: NF7606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7606_low_1
NF7606_low_1
[»] chr7 (4 HSPs)
chr7 (1-677)||(24613061-24613738)
chr7 (123-198)||(28749911-28749986)
chr7 (130-207)||(10980654-10980731)
chr7 (124-184)||(36034458-36034519)
[»] scaffold0024 (1 HSPs)
scaffold0024 (99-218)||(36212-36331)
[»] chr3 (6 HSPs)
chr3 (96-200)||(34809110-34809215)
chr3 (134-233)||(26502775-26502877)
chr3 (134-196)||(42890647-42890709)
chr3 (126-219)||(24924566-24924659)
chr3 (139-200)||(45745517-45745578)
chr3 (93-190)||(2910682-2910779)
[»] chr8 (4 HSPs)
chr8 (119-207)||(11517604-11517692)
chr8 (99-183)||(32967551-32967633)
chr8 (120-200)||(3490234-3490314)
chr8 (97-141)||(32472065-32472108)
[»] chr5 (7 HSPs)
chr5 (129-233)||(39074999-39075103)
chr5 (134-233)||(22732130-22732232)
chr5 (134-252)||(26362447-26362564)
chr5 (92-200)||(40555617-40555723)
chr5 (133-210)||(12298407-12298484)
chr5 (122-192)||(40197670-40197740)
chr5 (126-175)||(24514439-24514488)
[»] chr1 (10 HSPs)
chr1 (98-232)||(27858707-27858840)
chr1 (98-233)||(24084114-24084252)
chr1 (123-210)||(22315049-22315136)
chr1 (134-200)||(25113810-25113875)
chr1 (126-233)||(14321030-14321140)
chr1 (123-210)||(30640215-30640302)
chr1 (140-233)||(35838330-35838425)
chr1 (126-228)||(26663106-26663210)
chr1 (123-183)||(15646123-15646183)
chr1 (139-207)||(44107703-44107771)
[»] chr6 (5 HSPs)
chr6 (131-210)||(10424676-10424755)
chr6 (126-198)||(27133915-27133987)
chr6 (97-252)||(31247660-31247816)
chr6 (139-233)||(9062861-9062958)
chr6 (97-207)||(31238290-31238400)
[»] chr2 (8 HSPs)
chr2 (121-200)||(43470481-43470560)
chr2 (120-200)||(32809987-32810068)
chr2 (99-190)||(17563516-17563607)
chr2 (123-233)||(37807232-37807345)
chr2 (123-200)||(37985142-37985219)
chr2 (100-277)||(38778729-38778907)
chr2 (97-210)||(45475185-45475297)
chr2 (121-149)||(31776069-31776097)
[»] chr4 (12 HSPs)
chr4 (126-207)||(52708531-52708612)
chr4 (134-256)||(43134445-43134564)
chr4 (124-207)||(32004408-32004491)
chr4 (100-160)||(29588566-29588628)
chr4 (140-233)||(46737258-46737354)
chr4 (139-233)||(779746-779844)
chr4 (123-200)||(26784769-26784846)
chr4 (98-233)||(55292291-55292429)
chr4 (96-210)||(16467882-16467995)
chr4 (123-192)||(27924034-27924103)
chr4 (126-207)||(38179832-38179913)
chr4 (124-192)||(35803556-35803624)


Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 677
Target Start/End: Original strand, 24613061 - 24613738
Alignment:
Q  1 gtgaagacataataaggtgattatgctttaagataattgtaggcatttgattgatgatgaagatcacaatcgacctacggtactaaatacattttgggaa 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||    
T  24613061 gtgaagacataataaggtgattatg-tttaagataattgtaggcatttgattgatgatgaagatcacaatcgatccacggtactaaatatattttgggaa 24613159  T
Q  101 atgctaactagtgttccgaggacactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtca 200  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24613160 atgctaactagtgtctcgaggatactagttaagaaaactaatatagaaattttgcattgagaattagtgaaaagtagaatgttcaactttatgaaagtca 24613259  T
Q  201 gaaagttatttttaatgaagaatttctattttttacactttcttaattagtgcctctaggatagtagttagcatgacacatgtattttatatgaaaactc 300  Q
     |||||| ||||||||||| | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||   ||||||||||||||||||    
T  24613260 aaaagttgtttttaatgaaaattttctatttttaacactttcttaattagtacctctaggatagtagttagcatgacac---tattttatatgaaaactc 24613356  T
Q  301 acttaggttgatctcgtgttgtt-gcgagacattatagtgtgtttctctcaatgtctcagctttgactcttctcgatatcaattttgatgagttagtttg 399  Q
     ||||||||  |||  ||||||| || ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  24613357 gcttaggttagtctgatgttgttggcaagacattatagtgtgcttctctcaatgtctcaggtttgactcttctcgatatcaatttcgatgagttagtttg 24613456  T
Q  400 accttctaaaaacatacattttatatgaatctttttctattctccaccaattgatttcgagctttttgatgtagtgtgacgctcatgat-nnnnnnnnnn 498  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  24613457 accttctaaaaaaatacattttatatgaatcttttcctattctccaccaattgatttcgagctttttgatgtagtgtgacgctcatgataaaaaaaaaaa 24613556  T
Q  499 tgtcattttatttatgagannnnnnnnnnctttagaaaattttatattaataatcgcatattcaaaattttaaatgtataaaaatgagaaatgacattta 598  Q
    |||||||||||||||||||          |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24613557 tgtcattttatttatgagattttttttttctttaggaaattttatattaattatcgcatattcaaaattttaaatgtataaaaatgagaaatgacattta 24613656  T
Q  599 tattactattttcgacaatatttaaaacaactctcgtacttttatttatcgtattattttg---tttatctttgattgtctc 677  Q
    |||||||| ||| ||||||||||||||||||| || |||||||||||||||||||||||||   | ||||||||||||||||    
T  24613657 tattactacttttgacaatatttaaaacaactttcatacttttatttatcgtattattttgtactatatctttgattgtctc 24613738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 28749911 - 28749986
Alignment:
Q  123 cactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagt 198  Q
    ||||||||||||| | ||||||||||||| |||||||  ||||  | |||||||||||||| ||||||||||||||    
T  28749911 cactagttaagaagattaatatagaaattatgcattggaaattgatgaaaagtagaatgtttaactttatgaaagt 28749986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 10980654 - 10980731
Alignment:
Q  130 taagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaagtt 207  Q
    |||||| | ||||||| ||||| || ||||| ||||||| |||||||||||||| |||||||| ||||| | ||||||    
T  10980654 taagaagattaatatataaattatgtattgaaaattagtgaaaagtagaatgtttaactttataaaagttaaaaagtt 10980731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 36034458 - 36034519
Alignment:
Q  124 actagttaagaaaa-ctaatatagaaattttgcattgagaattagtaaaaagtagaatgttc 184  Q
    |||||||||||||| |||||||||||| |||||||||| || |  |||||||||||||||||    
T  36034458 actagttaagaaaaactaatatagaaactttgcattgaaaagtgataaaaagtagaatgttc 36034519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 99 - 218
Target Start/End: Original strand, 36212 - 36331
Alignment:
Q  99 aaatgctaactagtgttccgaggacactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagt 198  Q
    |||||||||||||||| |  ||| ||||||||||||| |||| |||||||||| |||||||  |||  || |||| | ||||||| ||||||||||||||    
T  36212 aaatgctaactagtgtccttagggcactagttaagaagactattatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaagt 36311  T
Q  199 cagaaagttatttttaatga 218  Q
    || |||||||||||||||||    
T  36312 caaaaagttatttttaatga 36331  T

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Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 34809110 - 34809215
Alignment:
Q  96 gggaaatgctaactagtgttccgaggacactagttaag-aaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatga 194  Q
    |||||||| ||| |||||  || ||| ||||||||||| |||||||||||||||| ||||||||||||| | || |||||||||||||| ||||||||||    
T  34809110 gggaaatgttaagtagtgccccaagggcactagttaaggaaaactaatatagaaactttgcattgagaaatggtgaaaagtagaatgtttaactttatga 34809209  T
Q  195 aagtca 200  Q
    ||||||    
T  34809210 aagtca 34809215  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 26502775 - 26502877
Alignment:
Q  134 aaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaagttatt---tttaatgaagaatttctatt 230  Q
    |||||||||||| ||| ||||||||||||| | |  ||||||||||||||||||||| | ||||||| |||||| ||   ||| ||||| ||||||||||    
T  26502775 aaaactaatatataaactttgcattgagaagtggcgaaaagtagaatgttcaactttttaaaagtcaaaaagttgttgtgttttatgaaaaatttctatt 26502874  T
Q  231 ttt 233  Q
    |||    
T  26502875 ttt 26502877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 42890647 - 42890709
Alignment:
Q  134 aaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaa 196  Q
    |||||||||||||||| ||||||||  ||| |  | |||||||||||||||||||||||||||    
T  42890647 aaaactaatatagaaactttgcattaggaagtgctgaaaagtagaatgttcaactttatgaaa 42890709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 24924659 - 24924566
Alignment:
Q  126 tagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaagttatttttaatgaa 219  Q
    |||||||||| | ||||||||||||| |||||| | |||| || ||||||| |||||| | |||||||||||| | || |||  ||||||||||    
T  24924659 tagttaagaagattaatatagaaattatgcattaaaaattggtgaaaagtataatgtttagctttatgaaagttaaaacgttgattttaatgaa 24924566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 45745517 - 45745578
Alignment:
Q  139 taatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtca 200  Q
    ||||||||||||| |||||||| ||||  |||||| | ||||||| ||||||||||||||||    
T  45745517 taatatagaaattatgcattgaaaattgataaaaaatggaatgtttaactttatgaaagtca 45745578  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 2910682 - 2910779
Alignment:
Q  93 tttgggaaatgctaactagtgttccgaggacactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaacttt 190  Q
    |||||| |||| ||||| ||| ||| ||| ||||||||||| | ||||||| | ||| |||||||||| ||||  ||||||||   ||||||||||||    
T  2910682 tttgggtaatgttaactggtgctcccagggcactagttaaggagactaataaaaaaagtttgcattgaaaattgttaaaaagtgctatgttcaacttt 2910779  T

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Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 11517692 - 11517604
Alignment:
Q  119 aggacactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaagtt 207  Q
    ||||||||| ||||||||| ||||||| ||||| |||||||  |||| ||||||||||||||||| |||||||||||||||| ||||||    
T  11517692 aggacactaattaagaaaattaatataaaaattatgcattggaaattggtaaaaagtagaatgtttaactttatgaaagtcaaaaagtt 11517604  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 32967633 - 32967551
Alignment:
Q  99 aaatgctaactagtgttccgaggacactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgtt 183  Q
    |||||||||| |||||||| |||||||||| | ||||||||||||||||||||||||||| | |  |||| |||||| |||||||    
T  32967633 aaatgctaac-agtgttcc-aggacactagctgagaaaactaatatagaaattttgcattaaaatgtagtgaaaagttgaatgtt 32967551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 3490314 - 3490234
Alignment:
Q  120 ggacactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtca 200  Q
    ||||||||| |||||||| | || ||| ||||||||||||| ||||  |||||||| | ||||| |||||| | |||||||    
T  3490314 ggacactagataagaaaatttatttaggaattttgcattgaaaattgttaaaaagtggtatgtttaactttttaaaagtca 3490234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 32472065 - 32472108
Alignment:
Q  97 ggaaatgctaactagtgttccgaggacactagttaagaaaactaa 141  Q
    |||||||||||||||||| || ||||||||||||||| |||||||    
T  32472065 ggaaatgctaactagtgt-ccaaggacactagttaaggaaactaa 32472108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 39074999 - 39075103
Alignment:
Q  129 ttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaagttatttttaatgaagaatttcta 228  Q
    ||||||| | ||||||||||||| |||||||| ||||  ||||| || ||||||| |||||||| ||||||| |||||| ||||||||||| | ||||||    
T  39074999 ttaagaagattaatatagaaattatgcattgaaaattgataaaaggtggaatgtttaactttataaaagtcaaaaagttgtttttaatgaaaattttcta 39075098  T
Q  229 ttttt 233  Q
    |||||    
T  39075099 ttttt 39075103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 22732232 - 22732130
Alignment:
Q  134 aaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaagtta---tttttaatgaagaatttctatt 230  Q
    ||||||||||||||| ||||||||||| || | || ||||||||||| ||||||||||||||| ||| ||| |||   ||||||||||| |||| |||||    
T  22732232 aaaactaatatagaagttttgcattgaaaagtggtgaaaagtagaatattcaactttatgaaattcaaaaaattattgtttttaatgaaaaattcctatt 22732133  T
Q  231 ttt 233  Q
    |||    
T  22732132 ttt 22732130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 252
Target Start/End: Original strand, 26362447 - 26362564
Alignment:
Q  134 aaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaagttat--ttttaatgaagaatttctattt 231  Q
    |||||||||||| ||||||| ||||| ||| | || ||||||| ||| ||||||||||||||||||| |||||| |  |||| ||||| |||| ||||||    
T  26362447 aaaactaatataaaaattttacattgggaagtggtgaaaagtaaaatattcaactttatgaaagtcaaaaagttgttgtttttatgaaaaattactattt 26362546  T
Q  232 tttacactttcttaattagtg 252  Q
    ||   |||| |||||||||||    
T  26362547 tt---acttccttaattagtg 26362564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 40555723 - 40555617
Alignment:
Q  92 ttttgggaaatgctaactagtgttccgaggacactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaacttta 191  Q
    ||||||| |||| |||||||||| ||| |  |||||| |||| | |||||| ||||||||||||||||||||||  |||||| | | ||||||||||||     
T  40555723 ttttgggtaatgttaactagtgtcccggg--cactagataagtagactaatttagaaattttgcattgagaattgttaaaaaattgtatgttcaactttt 40555626  T
Q  192 tgaaagtca 200  Q
    | |||||||    
T  40555625 taaaagtca 40555617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 12298407 - 12298484
Alignment:
Q  133 gaaaactaatatagaaattttgcatt-gagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaagttatt 210  Q
    |||||| |||||||||| |||| ||| || |||| || || |||||||||||||||||||||||||||| |||||||||    
T  12298407 gaaaaccaatatagaaactttgtattagaaaatt-gtgaagagtagaatgttcaactttatgaaagtcaaaaagttatt 12298484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 40197740 - 40197670
Alignment:
Q  122 acactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttat 192  Q
    |||||||||||||| | ||||||||||||| |||||||  ||||||| |||||| ||||||| || |||||    
T  40197740 acactagttaagaagattaatatagaaattatgcattggaaattagtgaaaagtggaatgtttaattttat 40197670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 24514488 - 24514439
Alignment:
Q  126 tagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagt 175  Q
    |||||||| | |||||||||||||||||||||||| ||||  ||||||||    
T  24514488 tagttaaggatactaatatagaaattttgcattgaaaattgttaaaaagt 24514439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 98 - 232
Target Start/End: Complemental strand, 27858840 - 27858707
Alignment:
Q  98 gaaatgctaactagtgttccgaggacactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaag 197  Q
    ||||||||||||||||  || ||| ||||| ||||||| | ||||||| ||||| ||| |||| |||| || |||||| ||||||| || ||||||||||    
T  27858840 gaaatgctaactagtgc-cctagggcactaattaagaagattaatataaaaattatgcgttgaaaattggtgaaaagttgaatgtttaagtttatgaaag 27858742  T
Q  198 tcagaaagttatttttaatgaagaatttctatttt 232  Q
    ||| ||| || |||||||| || ||||||||||||    
T  27858741 tcaaaaaattgtttttaataaaaaatttctatttt 27858707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 98 - 233
Target Start/End: Original strand, 24084114 - 24084252
Alignment:
Q  98 gaaatgctaactagtgttccgaggacactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaag 197  Q
    ||||||||||||||||  |  |||||||||||||| || | ||||||| ||||| || ||||| ||||  |||||||| ||||||| |||||||||||||    
T  24084114 gaaatgctaactagtgcccttaggacactagttaaaaagattaatataaaaattatgtattgaaaattgataaaaagtggaatgtttaactttatgaaag 24084213  T
Q  198 tcagaaa---gttatttttaatgaagaatttctattttt 233  Q
    ||| |||   ||| ||||| ||||| | |||||||||||    
T  24084214 tcaaaaaattgttgtttttgatgaaaattttctattttt 24084252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 22315049 - 22315136
Alignment:
Q  123 cactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaagttatt 210  Q
    ||||||||||| | |||||||||||| |||||||||| ||| || | |||||| |||||||| ||||||||||||||| | |||||||    
T  22315049 cactagttaaggagactaatatagaagttttgcattgggaaataatgaaaagtggaatgttccactttatgaaagtcaaacagttatt 22315136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 25113810 - 25113875
Alignment:
Q  134 aaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtca 200  Q
    ||||||||||||||||||||||| || ||||| || |||| ||||||||| ||||||||||||||||    
T  25113810 aaaactaatatagaaattttgca-tgggaattggtgaaaaatagaatgtttaactttatgaaagtca 25113875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 14321140 - 14321030
Alignment:
Q  126 tagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaa---gttatttttaatgaagaa 222  Q
    |||||||||| | ||||||||||||| |||||||| ||||  | ||||||| |||||| || ||||||||||| | |||   ||| ||||||||||| |     
T  14321140 tagttaagaagattaatatagaaattatgcattgaaaattgatgaaaagtaaaatgtttaattttatgaaagtaaaaaagttgttgtttttaatgaaaat 14321041  T
Q  223 tttctattttt 233  Q
    |||||||||||    
T  14321040 tttctattttt 14321030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 30640215 - 30640302
Alignment:
Q  123 cactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaagttatt 210  Q
    |||||| |||| | ||||||||||||||||||||||||||| || | ||||||  ||||||  ||||||||||| ||| ||| |||||    
T  30640215 cactagataaggagactaatatagaaattttgcattgagaaataatgaaaagtgtaatgtttcactttatgaaaatcaaaaaattatt 30640302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 35838425 - 35838330
Alignment:
Q  140 aatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaa---gttatttttaatgaagaatttctattttt 233  Q
    |||||| ||||| |||||||| |||| || |||||||||||||| |||||||||||||||| |||   |||||||||||| || | ||| |||||||    
T  35838425 aatataaaaattatgcattgaaaattggtgaaaagtagaatgtt-aactttatgaaagtcaaaaaattgttatttttaataaaaattttatattttt 35838330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 26663106 - 26663210
Alignment:
Q  126 tagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaagttat--ttttaatgaagaat 223  Q
    |||||||||| | |||||||||| ||||||||| | ||||  | |||||| |||||||||||| ||||||| ||| || ||| |  |||||||||| |||    
T  26663106 tagttaagaagattaatatagaatttttgcattaaaaattgatgaaaagttgaatgttcaactctatgaaaatcaaaaggttgttgttttaatgaaaaat 26663205  T
Q  224 ttcta 228  Q
    |||||    
T  26663206 ttcta 26663210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 15646123 - 15646183
Alignment:
Q  123 cactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgtt 183  Q
    ||||||||||||| | ||||||||||||| |||||||| ||||  | |||||| |||||||    
T  15646123 cactagttaagaagattaatatagaaattatgcattgaaaattgatgaaaagtggaatgtt 15646183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 44107703 - 44107771
Alignment:
Q  139 taatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaagtt 207  Q
    |||||| |||||| || ||||  |||| || |||||||||||||| | |||||||||||||| ||||||    
T  44107703 taatattgaaattatgtattggaaattggtgaaaagtagaatgtttacctttatgaaagtcaaaaagtt 44107771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 10424676 - 10424755
Alignment:
Q  131 aagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaagttatt 210  Q
    ||||||||||||||||||| |||||||||  |||| || ||||||| ||| |||||| |||||||||||| |||||||||    
T  10424676 aagaaaactaatatagaaactttgcattggaaattggtcaaaagtaaaattttcaaccttatgaaagtcaaaaagttatt 10424755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 27133915 - 27133987
Alignment:
Q  126 tagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagt 198  Q
    |||||||||| | |||||||| ||||||||||||| |||| || |||||| ||||||| |||| |||||||||    
T  27133915 tagttaagaagattaatatagtaattttgcattgaaaattggtgaaaagtggaatgtttaactatatgaaagt 27133987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 252
Target Start/End: Original strand, 31247660 - 31247816
Alignment:
Q  97 ggaaatgctaactagtgttccgaggacactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaa 196  Q
    ||||||| |||||||||   | |||||||| |||||  | |||||||||||||||||||||||  || |  | ||||||  ||||||| ||||||| |||    
T  31247660 ggaaatgttaactagtgcctccaggacacttgttaacgagactaatatagaaattttgcattggaaaatgatgaaaagtgaaatgttccactttataaaa 31247759  T
Q  197 gtcagaaa---gttatttttaatgaagaatttctattttttacactttcttaattagtg 252  Q
    |||| |||   ||| ||||||||| | ||||||||  ||||| |||||||||| |||||    
T  31247760 gtcaaaaagttgttgtttttaatggaaaatttcta--ttttaaactttcttaactagtg 31247816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 9062958 - 9062861
Alignment:
Q  139 taatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaa---gttatttttaatgaagaatttctattttt 233  Q
    ||||||||||||| |||||||  |||| || |||||| ||||||| |||||||||||||  | |||   ||| ||||||||||| | |||||||||||    
T  9062958 taatatagaaattatgcattggaaattggtgaaaagttgaatgtttaactttatgaaagataaaaagttgttgtttttaatgaaaattttctattttt 9062861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 97 - 207
Target Start/End: Original strand, 31238290 - 31238400
Alignment:
Q  97 ggaaatgctaactagtgttccgaggacactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaa 196  Q
    ||||||| |||||||||   | |||||||| |||||  | |||||||||||||||||||||||  || |  | ||||||  ||||||| ||||||| |||    
T  31238290 ggaaatgttaactagtgcctccaggacacttgttaacgagactaatatagaaattttgcattggaaaatgatgaaaagtgaaatgttccactttataaaa 31238389  T
Q  197 gtcagaaagtt 207  Q
    |||| ||||||    
T  31238390 gtcaaaaagtt 31238400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 43470560 - 43470481
Alignment:
Q  121 gacactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtca 200  Q
    ||||||| |||| ||||||||||||||||||| |||||  ||| | ||||||||| |||| |||||||||||||||||||    
T  43470560 gacactaattaaaaaaactaatatagaaatttggcattaggaagttgtaaaaagtggaatattcaactttatgaaagtca 43470481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 32809987 - 32810068
Alignment:
Q  120 ggacactagttaagaaaa-ctaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtca 200  Q
    ||||| |||||||||||| |||||||||||| ||||||||| ||| | || ||||||| ||||||||||||||| |||||||    
T  32809987 ggacattagttaagaaaaactaatatagaaactttgcattgggaagtggtgaaaagtaaaatgttcaactttataaaagtca 32810068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 17563516 - 17563607
Alignment:
Q  99 aaatgctaactagtgttccgaggacactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaacttt 190  Q
    |||||||||||||||  || | | | |||||||||||||||||| || |||||||||||| | ||||  |||||||||| ||||||||||||    
T  17563516 aaatgctaactagtgcccccaaggctctagttaagaaaactaatttaaaaattttgcattaaaaattgttaaaaagtagtatgttcaacttt 17563607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 123 - 233
Target Start/End: Original strand, 37807232 - 37807345
Alignment:
Q  123 cactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaa---gttatttttaatgaa 219  Q
    ||||||||||||| | ||||||||||||| ||||||   |||| || |||| |  |||||| |||||||||||||||| |||   ||| |||||||| ||    
T  37807232 cactagttaagaagattaatatagaaattatgcattacaaattggtgaaaaatgaaatgtttaactttatgaaagtcaaaaaggtgttgtttttaataaa 37807331  T
Q  220 gaatttctattttt 233  Q
     |||||||||||||    
T  37807332 aaatttctattttt 37807345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 37985142 - 37985219
Alignment:
Q  123 cactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtca 200  Q
    |||||||||| || | ||||||||||||| | |||||| |||| || ||||||  |||||| ||||||||||||||||    
T  37985142 cactagttaataagattaatatagaaattatacattgaaaattggtgaaaagtgaaatgttaaactttatgaaagtca 37985219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 277
Target Start/End: Complemental strand, 38778907 - 38778729
Alignment:
Q  100 aatgctaactagtgttccgaggacactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtc 199  Q
    |||| |||||||||||||  || |||||| |||| | |||||| || |||||||||||||| |||   |||||| | | |||||||||||| | ||||||    
T  38778907 aatgttaactagtgttcctggggcactagataaggagactaatttaaaaattttgcattgaaaatcgttaaaaaattgtatgttcaactttttaaaagtc 38778808  T
Q  200 agaa---agttatttttaatgaagaatttctattttttacactttcttaattagtgcctctaggatagtagttagcatgac 277  Q
    | ||    ||| |||| ||  || ||||||||||||||  |||||||||| ||||||| |  || ||||||||| ||||||    
T  38778807 aaaagtttgttgttttcaagtaaaaatttctatttttt--actttcttaactagtgccccaggggtagtagttaacatgac 38778729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 45475297 - 45475185
Alignment:
Q  97 ggaaatgctaactagtgttccgaggacactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaa 196  Q
    ||||||| ||||||||| || | || ||||||||||| | | |||| ||||| |||||||||||||| |  | |||  | |||||||| ||||||| |||    
T  45475297 ggaaatgttaactagtgctctgggg-cactagttaaggagattaatttagaagttttgcattgagaaatgatgaaatatggaatgttctactttattaaa 45475199  T
Q  197 gtcagaaagttatt 210  Q
    |||| |||||||||    
T  45475198 gtcaaaaagttatt 45475185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 31776097 - 31776069
Alignment:
Q  121 gacactagttaagaaaactaatatagaaa 149  Q
    |||||||||||||||||||||||||||||    
T  31776097 gacactagttaagaaaactaatatagaaa 31776069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 52708612 - 52708531
Alignment:
Q  126 tagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaagtt 207  Q
    ||||||||||   ||||||||||||| | |||||| ||||||| |||||| ||||||| |||||||||||||||| ||||||    
T  52708612 tagttaagaaggttaatatagaaattgtacattgaaaattagtgaaaagttgaatgtttaactttatgaaagtcaaaaagtt 52708531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 134 - 256
Target Start/End: Complemental strand, 43134564 - 43134445
Alignment:
Q  134 aaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaagttatttttaatgaagaatttctattttt 233  Q
    |||| |||| |||||| ||||||||  ||| | || | ||||||||||||||||||| ||||||| | |||||| ||||| ||||| |||||||||||||    
T  43134564 aaaattaatgtagaaactttgcattaggaagtggtgataagtagaatgttcaactttttgaaagttaaaaagttgttttttatgaaaaatttctattttt 43134465  T
Q  234 tacactttcttaattagtgcctc 256  Q
       |||| ||||| |||||||||    
T  43134464 ---acttccttaactagtgcctc 43134445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 207
Target Start/End: Original strand, 32004408 - 32004491
Alignment:
Q  124 actagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaagtt 207  Q
    |||||||||||| | ||||||||||||| |||||| | |||| |  |||||| ||||||| |||||||||||||||| ||||||    
T  32004408 actagttaagaagattaatatagaaattatgcatttaaaattggggaaaagtggaatgtttaactttatgaaagtcaaaaagtt 32004491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 29588566 - 29588628
Alignment:
Q  100 aatgctaactagtgttccgaggacactagttaa-gaaaactaatatag-aaattttgcattga 160  Q
    ||||||||||||||||||||| ||||||||||| |||||| || |||| ||||||||||||||    
T  29588566 aatgctaactagtgttccgagaacactagttaaggaaaacaaaaatagaaaattttgcattga 29588628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 46737258 - 46737354
Alignment:
Q  140 aatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaagtta---tttttaatgaagaatttctattttt 233  Q
    |||||||||||| |||||||  ||||  | |||||| ||||||| |||||||||||| ||| |||||||   ||||||||||| | |||||||||||    
T  46737258 aatatagaaattctgcattggaaattgatgaaaagtggaatgtttaactttatgaaaatcaaaaagttattgtttttaatgaaaattttctattttt 46737354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 233
Target Start/End: Original strand, 779746 - 779844
Alignment:
Q  139 taatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaa----gttatttttaatgaagaatttctattttt 233  Q
    ||||||||||||| ||||||   |||| || |||||| ||||||| |||||||||||||||| |||    ||| ||||||||||| | |||||||||||    
T  779746 taatatagaaattatgcatttgaaattggtgaaaagttgaatgtttaactttatgaaagtcaaaaaagttgttgtttttaatgaaaattttctattttt 779844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 26784846 - 26784769
Alignment:
Q  123 cactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtca 200  Q
    ||||||||||| | |||||| ||||||||||||||||  ||||  |||||||| | |||||||||||| | |||||||    
T  26784846 cactagttaaggagactaatttagaaattttgcattggaaattgttaaaaagtggtatgttcaactttttaaaagtca 26784769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 233
Target Start/End: Complemental strand, 55292429 - 55292291
Alignment:
Q  98 gaaatgctaactagtgttccgaggacactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaag 197  Q
    |||||| |||||| |||||  || |||||||||||||| | ||||||||||||| || ||| | |||| || |||| |  |||||| || |||||||||     
T  55292429 gaaatgttaactaatgttctaagcacactagttaagaagattaatatagaaattatgtattaaaaattggtgaaaactgaaatgtttaattttatgaaaa 55292330  T
Q  198 tcagaaa---gttatttttaatgaagaatttctattttt 233  Q
    ||| |||   ||| ||||||||||| || ||||||||||    
T  55292329 tcaaaaagttgttgtttttaatgaaaaaattctattttt 55292291  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 16467995 - 16467882
Alignment:
Q  96 gggaaatgctaactagtgttccgaggacactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaa 195  Q
    ||||||||||||||| |  ||  | |||| |||||||||| | ||||||||||||| ||||||| ||| | |   ||||| ||||||| |||||||||||    
T  16467995 gggaaatgctaactaatactctaaagacaatagttaagaagattaatatagaaattatgcattg-gaaattgatgaaagttgaatgtttaactttatgaa 16467897  T
Q  196 agtcagaaagttatt 210  Q
    ||| | |||||||||    
T  16467896 agtaaaaaagttatt 16467882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 27924103 - 27924034
Alignment:
Q  123 cactagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttat 192  Q
    ||||||||||||| | ||||||||||||| |||||||  |||| ||  ||||| ||||||| ||||||||    
T  27924103 cactagttaagaagattaatatagaaattatgcattggaaattggtggaaagttgaatgtttaactttat 27924034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 38179832 - 38179913
Alignment:
Q  126 tagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttatgaaagtcagaaagtt 207  Q
    |||||||||| | ||||||||||||| || |||   ||||  | |||||| ||||||| |||||||||||||||| ||||||    
T  38179832 tagttaagaagattaatatagaaattatgtattagaaatttatgaaaagttgaatgtttaactttatgaaagtcaaaaagtt 38179913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 35803624 - 35803556
Alignment:
Q  124 actagttaagaaaactaatatagaaattttgcattgagaattagtaaaaagtagaatgttcaactttat 192  Q
    ||||||||||||   ||||||||||||| |||||||| |||| |||||||||  ||| || ||||||||    
T  35803624 actagttaagaagtttaatatagaaattatgcattgaaaattggtaaaaagtgaaatatttaactttat 35803556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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