View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7606_low_2 (Length: 538)
Name: NF7606_low_2
Description: NF7606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7606_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 20 - 528
Target Start/End: Complemental strand, 129110 - 128602
Alignment:
| Q |
20 |
taatacaatgaggggaaggagggtagttattacgtatatcaggttatattgacttttcttttcggggttaatgatttttctgcttacttcttcagtctat |
119 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
129110 |
taatacaatgaggggaagtagggtagttattacgtatatcaggttatattgacttttcttttcggggttaatgatttatctgcttacttcttcagtctat |
129011 |
T |
|
| Q |
120 |
tattacatcattcaaagtgcactgtttaaatcaaaatcaagtaggccctggttaatatggtttgactttaaagaactgttgttaatagttatgtggctct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
129010 |
tattacatcattcaaagtgcactgtttaaatcaaaatcaagtaggccctggttaatatggtttgactttaaagaaccgttgttaatagttatgtggctct |
128911 |
T |
|
| Q |
220 |
gttttaagtccacaatataaagctgtaagcatcttagttttatatcttaagttgtctaagtaaacagatttccatttgtaatttctaaacagaacaaaaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
128910 |
gttttaagtccacaatataaagctgtaagcatcttagttttatatcttaagttgtccaagtaaacagatttccatttgtaatttctaaacagaacaaaaa |
128811 |
T |
|
| Q |
320 |
tttgaagcccattgagttgcttgactgattcttaatggtaaattcaaactaaaacagaaacaggttcttggatatgatgaagttgaagaggaatgaagat |
419 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
128810 |
tttgaagctcattgagttgcttgactgattcttaatggtaaattcaaactaaaacaggaacaggttcttggatatgatgaagctgaagaggaatgaagat |
128711 |
T |
|
| Q |
420 |
tgacgatattcagatactgaaatgataagaattagtaattttgagttgtattgtgaaattgtaatgggaatgatgaagttgaagaggagagaagacctga |
519 |
Q |
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| T |
128710 |
tgacgatattcagagactgaaatgataagaattagtaattttgagtagtattgtgaaattgtaatgggaatgatgaagttgaagaggagagaagacctga |
128611 |
T |
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| Q |
520 |
tattcttcg |
528 |
Q |
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|||| |||| |
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| T |
128610 |
tattattcg |
128602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 23 - 311
Target Start/End: Complemental strand, 44773645 - 44773357
Alignment:
| Q |
23 |
tacaatgaggggaaggagggtagttattacgtatatcaggttatattgacttttcttttcggggttaatgatttttctgcttacttcttcagtctattat |
122 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| |
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| T |
44773645 |
tacaatgaggggaaggagggtagttattatgtatatcaggttatgttgacttttctttttggggctaatgatttatctgcttacttcttcagtctattat |
44773546 |
T |
|
| Q |
123 |
tacatcattcaaagtgcactgtttaaatcaaaatcaagtaggccctggttaatatggtttgactttaaagaactgttgttaatagttatgtggctctgtt |
222 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44773545 |
tacatcattcaaagtgcactgtttaaattaaaaccaagtaggccctggttaatatggtttgactttaaataactgttgttaatagttatgtggctctgtt |
44773446 |
T |
|
| Q |
223 |
ttaagtccacaatataaagctgtaagcatcttagttttatatcttaagttgtctaagtaaacagatttccatttgtaatttctaaacag |
311 |
Q |
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|||||||||||||| ||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44773445 |
ttaagtccacaatacaaagctgtaagcatcttagaattctatattaagttgtctaagtaaacagatttccatttgtaatttctaaacag |
44773357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 308 - 388
Target Start/End: Complemental strand, 44772139 - 44772058
Alignment:
| Q |
308 |
acagaacaaaaatttgaagcccattgagttgcttgactgattcttaatggtaaatt-caaactaaaacagaaacaggttctt |
388 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||| |||||| |
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| T |
44772139 |
acagaactaaaatttgaagcccattgagttgcttgactgattcttaacggtaaattacaaactaaaacaggaacaagttctt |
44772058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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