View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7606_low_4 (Length: 360)
Name: NF7606_low_4
Description: NF7606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7606_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 7835622 - 7835946
Alignment:
| Q |
19 |
gaatacatggatgatgttgatgtcttggaatt-acctcatgcccctagtcctgtattgttaatttgcatatctaactgaatataatgataataattagag |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7835622 |
gaatacatggatgatgttgatgtcttggaatttacctcatgcccctagtcctgtattgttaatttgcatatctaactgaatataatgataataattagag |
7835721 |
T |
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| Q |
118 |
ggtataattctaattctaaagtaacatgacgagaaatagtnnnnnnnttgaccagaaaatatggaatttgtctcattgtgactttggtttgcagtttatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7835722 |
ggtataattctaattctaaagtaacatgacgagaaatagtaaaaaatttgaccagaaagtatggaatttgtctcattgtgactttggtttgcagtttata |
7835821 |
T |
|
| Q |
218 |
accgatccataaattgtgtgacattgtgtgggtctctgatttaaattcggagacaaatgtacgaccttgataagattgatgatattgctcttcaatgcac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7835822 |
accgatccataaattgtgtgacattgtgtgggtctctgatttaaattcggagacaaatgtacgaccttgataagattgatgatattgctcttcaatgcac |
7835921 |
T |
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| Q |
318 |
aaaaacaaaagtctcctatgagttt |
342 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
7835922 |
aaaaacaaaagtctcctatgagttt |
7835946 |
T |
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