View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7606_low_8 (Length: 257)
Name: NF7606_low_8
Description: NF7606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7606_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 36649685 - 36649917
Alignment:
| Q |
14 |
aatatatgacatgacaagacttacaaatgaacttcctctcttccatagtaatggaggtgttgatgctctttctgatgttaaagatatgcaacttctgtta |
113 |
Q |
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| T |
36649685 |
aatatatgacatgacaagacttacaaatgaacttcctctcttccatagtaatggaggtgttgatgctctttctgatgttaaagatatgcaacttctgtta |
36649784 |
T |
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| Q |
114 |
gaaaatcttcaagatcatatgcatatatgctt--------gtatggaaatgattatgctcatgcaaattatgttatggcacaaaatgctaaacaatatgt |
205 |
Q |
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| T |
36649785 |
gaaaatcttcaagatcatatgcatatatgcttgtagtgcagtatggaaatgattatgctcatgcaaattatgttatggcacaaaatgctaaacaatatgt |
36649884 |
T |
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| Q |
206 |
atatgaacctcttgtatctttccttaagcttca |
238 |
Q |
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| T |
36649885 |
atatgaacctattgtatctttccttaagcttca |
36649917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 36643942 - 36643709
Alignment:
| Q |
14 |
aatatatgacatgacaagacttacaaatgaacttcctctcttccatagtaatggaggtgttgatgctctttctgatgttaaagatatgcaacttctgtta |
113 |
Q |
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| T |
36643942 |
aatatatgacatgacaaggcttccaaatgaccttccactcttcgtcagttatggaggtgccgatgctctttctgatgttaaagatgtgcaacttctgtta |
36643843 |
T |
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| Q |
114 |
gaaaatcttcaagatcat-atgcatatatgctt--------gtatggaaatgattatgctcatgcaaattatgttatggcacaaaatgctaaacaatatg |
204 |
Q |
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| T |
36643842 |
gaaagtctcaaagatcatgatgcagataagcttgtcgtgcagtacagaaatgactatgctcatgcagattatgttatggctcaaagtgctaaacaagatg |
36643743 |
T |
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| Q |
205 |
tatatgaacctcttgtatctttccttaagcttca |
238 |
Q |
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| T |
36643742 |
tatatgaacctcttatatctttctttaagcttca |
36643709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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