View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7606_low_9 (Length: 243)
Name: NF7606_low_9
Description: NF7606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7606_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 44802990 - 44803115
Alignment:
| Q |
1 |
tggagataaggatcggagataacttgaagagatttttctactatatatactaaacttgcaacggatttatgtacacatatttcttatcgggtggcaacca |
100 |
Q |
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| T |
44802990 |
tggagataaggatcggagataacttgaagagatttttctactatatatactaaacttgctgcggatttatgtacacatatttcttatcgggtggcaacca |
44803089 |
T |
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| Q |
101 |
attatgatcttccacgtgtgttccaa |
126 |
Q |
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| T |
44803090 |
attatgatcttccacgtgtgttccaa |
44803115 |
T |
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Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 44803153 - 44803258
Alignment:
| Q |
126 |
aaacgaaattatttgtttcaagataaagagtgttcaaagaaattatatatgtttcaagttagatggaaattagacagatctaacttgcacgtaacggaga |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44803153 |
aaacgaaattatttgtttcaagataaagagtgttcaaagaaattatatatgtttcaagttagatggaaattagacagatctaacttgcacgtagcggaga |
44803252 |
T |
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| Q |
226 |
tgatgt |
231 |
Q |
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|||||| |
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| T |
44803253 |
tgatgt |
44803258 |
T |
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