View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7607_high_15 (Length: 490)
Name: NF7607_high_15
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 4384200 - 4383938
Alignment:
| Q |
7 |
tgtccaagaatattaaccgacacattgttgtttatctcattagctgtggcatttgaagactctgtttgcttctcttgatcatcttttggctcaacgaatt |
106 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4384200 |
tgtccaaatatattaaccgacacattgttgtttatctcattagctgtggcatttgaagactctgtttgcttctcttgatcatcttttggctcaacgaatt |
4384101 |
T |
|
| Q |
107 |
cctttttagcatctatccccttctggttgaacccaattctatcttgtatgtcgtcttcatcatcatcaatactaataagtttcatcttgagagtaggcat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
4384100 |
cctttttagcatctatccccttctggttgaacccaattctatcttgtatgtcgtcttcatcatcatcaatactaataagttccttcttgagagtaggcat |
4384001 |
T |
|
| Q |
207 |
tcattctgttgattgccactgagtttctgttgtctatcatagtcataccaaagattacggagt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
4384000 |
tcattctgttgattgccactgagtttctgttgtctatcatagtcatagcaaacattacggagt |
4383938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 277 - 472
Target Start/End: Complemental strand, 4383884 - 4383689
Alignment:
| Q |
277 |
catctttgacagcagagaagctgcattgtagtgtttcgattatatgcaattcttagtgttatagggtataatgttgtggttaaatactacaattccattg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4383884 |
catctttgacagcagagaagctgcattgtagtttttcgattatatgcaattcttagtgttatagggtataatgttgtggttaaatactacaattccattg |
4383785 |
T |
|
| Q |
377 |
caagattaccttcctgtgctcgttgcacttttagctctactcgctttgctatgcttgatcgactatcagtgaatacaagtcgtacaccgcaggtca |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4383784 |
caagattaccttcctgtgctcgttgcacttttagctctactcgctttgctatgcttgatcgactatcagtgaatacaagtcgtaaaccgcaggtca |
4383689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 289 - 376
Target Start/End: Complemental strand, 4768984 - 4768899
Alignment:
| Q |
289 |
cagagaagctgcattgtagtgtttcgattatatgcaattcttagtgttatagggtataatgttgtggttaaatactacaattccattg |
376 |
Q |
| |
|
||||||||||||||||| || |||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| |
|
|
| T |
4768984 |
cagagaagctgcattgttgtttttcgattat--gcaattcttagtgttatagggtacaatgctgtggttaaatactacaattcgattg |
4768899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 36849605 - 36849704
Alignment:
| Q |
69 |
tgtttgcttctcttgatcatcttttggctcaacgaattcctttttagcatctatccccttctggttgaacccaattctatcttgtatgtcgtcttcatca |
168 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| || |||||||| ||||||| |||||| ||||||||| ||||||| |||||| |||| ||| ||||| |
|
|
| T |
36849605 |
tgtttgcttctcttgttcagcttttggctcactgacttccttttgagcatctgtcccctcctggttgaatccaattccttcttgtttgtcctctacatca |
36849704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 374 - 422
Target Start/End: Complemental strand, 4385482 - 4385434
Alignment:
| Q |
374 |
ttgcaagattaccttcctgtgctcgttgcacttttagctctactcgctt |
422 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
4385482 |
ttgcaagattaccttcatgtgctcgttgcacttttagctctgctcgctt |
4385434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 16231041 - 16230914
Alignment:
| Q |
50 |
ctgtggcatttgaagactctgtttgcttctcttgatcatcttttggctcaacgaattcctttttagcatctatcc---ccttctggttgaacccaattct |
146 |
Q |
| |
|
|||||| |||||| || || |||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||| |
|
|
| T |
16231041 |
ctgtggtatttgaggattcgatttgcttctcttgatcgtcttttggctcaacgaattcctttttagcatttatcccctcctgctggttgaacccagttct |
16230942 |
T |
|
| Q |
147 |
atcttgtatgtcgtcttcatcatcatca |
174 |
Q |
| |
|
|| ||||||| |||||||||||||| |
|
|
| T |
16230941 |
gcctcgtatgtcaacttcatcatcatca |
16230914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 34688825 - 34688665
Alignment:
| Q |
27 |
cacattgttgtttatctcattagctgtggcatttgaagactctgtttgcttctcttgatcatcttttggctcaacgaattcctttttagcatctatcccc |
126 |
Q |
| |
|
|||||| ||||| |||||| || ||||| |||||| ||||| ||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||| |
|
|
| T |
34688825 |
cacattattgttcatctcactaattgtggtatttgaggactcgatttgcttctcttgatcatcttttggctcaacaagttcctgtttagcatttatcccc |
34688726 |
T |
|
| Q |
127 |
ttc---tggttgaacccaattctatcttgtatgtcgtcttcatcatcatcaatactaataa |
184 |
Q |
| |
|
| | |||||||| ||| |||| || ||||||| |||||||||||||||| |||||| |
|
|
| T |
34688725 |
tcctgttggttgaatccagttctgcctcgtatgtcaatttcatcatcatcaataataataa |
34688665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 34711237 - 34711077
Alignment:
| Q |
27 |
cacattgttgtttatctcattagctgtggcatttgaagactctgtttgcttctcttgatcatcttttggctcaacgaattcctttttagcatctatcccc |
126 |
Q |
| |
|
|||||| ||||| |||||| || ||||| |||||| ||||| ||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||| |
|
|
| T |
34711237 |
cacattattgttcatctcactaattgtggtatttgaggactcgatttgcttctcttgatcatcttttggctcaacaagttcctgtttagcatttatcccc |
34711138 |
T |
|
| Q |
127 |
ttc---tggttgaacccaattctatcttgtatgtcgtcttcatcatcatcaatactaataa |
184 |
Q |
| |
|
| | |||||||| ||| |||| || ||||||| |||||||||||||||| |||||| |
|
|
| T |
34711137 |
tcctgttggttgaatccagttctgcctcgtatgtcaatttcatcatcatcaataataataa |
34711077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 35546696 - 35546785
Alignment:
| Q |
21 |
aaccgacacattgttgtttatctcattagctgtggcatttgaagactctgtttgcttctcttgatcatcttttggctcaacgaattcctt |
110 |
Q |
| |
|
||||| |||||||||||||||||||||| ||| | |||| | ||||| ||| |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
35546696 |
aaccgccacattgttgtttatctcattaattgtcgtatttaaggactcgattttcttctcttgatcatctttgggctcaacaaattcctt |
35546785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 35564747 - 35564801
Alignment:
| Q |
70 |
gtttgcttctcttgatcatcttttggctcaacgaattcctttttagcatctatcc |
124 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||| ||| ||||||| ||||| |
|
|
| T |
35564747 |
gttttcttctcttgatcatcttttggctcaacaaattgcttcttagcatttatcc |
35564801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 46520268 - 46520169
Alignment:
| Q |
75 |
cttctcttgatcatcttttggctcaacgaattcctttttagcatctatccccttctggttgaacccaattctatcttgtatgtcgtcttcatcatcatca |
174 |
Q |
| |
|
||||||||||||| ||||||| ||| | || || |||||| ||| |||||| |||||||| |||||||| |||||||||| ||||||||||||||| |
|
|
| T |
46520268 |
cttctcttgatcaacttttggttcactcactttctctttagcgtctgtcccctcgtggttgaatccaattcttccttgtatgtcctcttcatcatcatca |
46520169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 49879693 - 49879597
Alignment:
| Q |
69 |
tgtttgcttctcttgatcatcttttggctcaacgaattcctttttagcatctatccccttctggttgaacccaattctatcttgtatgtcgtcttca |
165 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||| |||||| | | |||||| | |||| |||| ||| |||| |||| ||||| |||||| |
|
|
| T |
49879693 |
tgtttgcttctcttgatcatcttttgactcaatgatttcttttttatcgtttatcccatcctggatgaatccagttctgccttgaatgtcctcttca |
49879597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University