View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_high_16 (Length: 483)
Name: NF7607_high_16
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 111 - 469
Target Start/End: Original strand, 35405683 - 35406041
Alignment:
| Q |
111 |
ggatgaaaaacaaaga--aaataaatgggacaagtaagtctaaaaattagatttatgaagtattaatgacgaagtgtatggtggcagatgcaacattgaa |
208 |
Q |
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| T |
35405683 |
ggatgaaaaacaaagagaaaataaatgggacaagtaagtctaaaaattagatttatgaagtattaatgacgaagtgtatggtggcagatgcaacattgaa |
35405782 |
T |
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| Q |
209 |
gaagtgcaataaaaggagcattgtttcagttgggtaggtctaccttttcataatggaatgctttcaataagtttttcaacttactcatttgaacccaccc |
308 |
Q |
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| T |
35405783 |
gaagtgcaataaaaggagcattgtttcagttgggtaggtctaccttttcataatggaatcctttcaataagttt--caacttactcatttgaacccaccc |
35405880 |
T |
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| Q |
309 |
ttcttctctcttattattcctcacacaaattttccctttgttcaatcccaaacaaagccaaaaattaaatcgttcaaactgcatgtagcagcacttcatc |
408 |
Q |
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| T |
35405881 |
ttcttctctcttattattcctcacacaaattttccctttgttcaatcccaaacaaagccaaaaattaaatcgttcaaactgcatgcagcagcacttcatc |
35405980 |
T |
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| Q |
409 |
aataatatcatgcaccatcatcaatacatgaatcaaatgcatattcagacaatgatgattt |
469 |
Q |
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| T |
35405981 |
aataatatcatgcaccatcatcaatacatgaatcaaatgcatattcagacaatgatgattt |
35406041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 48021045 - 48020980
Alignment:
| Q |
182 |
gtgtatggtggcagatgcaacattgaagaagtgcaataaaaggagcattg-tttcagttgggtaggt |
247 |
Q |
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| T |
48021045 |
gtgtatggtggcagatgc-acattgaaggagtgcaataaaaaggggattgttttcagttgggtaggt |
48020980 |
T |
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