View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_high_25 (Length: 455)
Name: NF7607_high_25
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 38 - 436
Target Start/End: Original strand, 42546370 - 42546768
Alignment:
| Q |
38 |
cttgcgaaaccatttaaaaaatcgtctacgtacatgtaaatttcatagaaaatatgactttgatattttatcagttccacatcaagaatatcactcttct |
137 |
Q |
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| T |
42546370 |
cttgcgaaaccatttaaaaaatcgtctacgtacacgtaaatttcatagaaaatatgactttgatattttatcagttccacatcaagaatatcactcttct |
42546469 |
T |
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| Q |
138 |
aaaatatccattgttccgtgtataattgtcaagctaaaggcatgattgctgattcaatatattggaacattacatcaataaacaataaaccattcaatta |
237 |
Q |
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| T |
42546470 |
aaaatatccattgttccgtgtataattgtcaagctaaaggcatgatcgctgattcaatatattggaacattacatcaataaacaataaaccattcaatta |
42546569 |
T |
|
| Q |
238 |
cttgaatgatcactaacatttgactttccttac----attgggattagaggtgaagagcgcgttatggaagtagtcataagaatatagatagaatttata |
333 |
Q |
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| T |
42546570 |
cttgaatgatcactaacatttgactttccttacattgattgggattagaggtgaagagcgcgttatggaagtagtcataagaat----atagaatttata |
42546665 |
T |
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| Q |
334 |
ctcagaagtagtatataccatttctagnnnnnnnnnnnnaatactaataatgcaggagtacgtagtattaaagttttaataggtgcaatgtaattgatta |
433 |
Q |
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| T |
42546666 |
ctcagaagtagtatataccatttctagtttttattttttaatactaataatgcaggagtacgtagtattaaagttttaataggtgcaatgtaattgatta |
42546765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 42546314 - 42546353
Alignment:
| Q |
3 |
gctacaatattttatcatctaaattaaattatgcgcttgc |
42 |
Q |
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| T |
42546314 |
gctacaatattttatcatctaaattaaattgtgcgcttgc |
42546353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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