View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_high_27 (Length: 447)
Name: NF7607_high_27
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 42471643 - 42471204
Alignment:
| Q |
1 |
catgaagatcttggagtagaattgtaagtgcatttgggtctgtatgccctggcaatccataagtaagttctggttgtgggcatggtggatagtaattcac |
100 |
Q |
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| T |
42471643 |
catgaagatcttggagtagaattgtaagtgcatttgggtctgtatgccctggcaatccataagtaagttctggttgtgggcatggtggatagtaattcac |
42471544 |
T |
|
| Q |
101 |
tgccatgtgctgcccttgttcacctaaagcattccttaagtaatctttttctaggcccaagctctctgatatgtattcttctattctcaaccccaattcc |
200 |
Q |
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| T |
42471543 |
tgccatgtgctgcccttgttcacctaaagcattccttaagtaatctttttctaggcccaagctctctgatatgtattcttctattctcaaccccaattcc |
42471444 |
T |
|
| Q |
201 |
ctaacttctttgcagtaatttgccacagtttccctgccacatacaaattatcatgcaacagttgtcaattatgttggaccttaatttgcttgttaattca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42471443 |
ctaacttctttgcagtaatttgccacagtttccctgccacatacaaattatcatgcaacagttgtcaattatgttggactttaatttgcttgttaattca |
42471344 |
T |
|
| Q |
301 |
tcatctaccgaaacacaaattattgatgggggcttgtttatcatttgtcatgaagagccttgtcgtagctgggcttaatcaaggagactgatgagtatat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42471343 |
tcatctaccgaaacacaaattattgatgggggcttgtttatcatttgtcatgaagagccttgtcgtagctgggcttaatcaaggagactgatgagtatat |
42471244 |
T |
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| Q |
401 |
gaatttttatcttccttatttttgtttattttcttcgaca |
440 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |
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| T |
42471243 |
gaatttttatcttccttatttttgtttattttctacgaca |
42471204 |
T |
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