View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7607_high_30 (Length: 430)

Name: NF7607_high_30
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7607_high_30
NF7607_high_30
[»] chr3 (7 HSPs)
chr3 (5-265)||(28978919-28979179)
chr3 (329-412)||(28978772-28978855)
chr3 (106-248)||(23270849-23270991)
chr3 (1-248)||(20142210-20142451)
chr3 (121-193)||(31108191-31108263)
chr3 (78-133)||(23161955-23162010)
chr3 (109-143)||(39854532-39854566)
[»] chr1 (4 HSPs)
chr1 (109-193)||(11199914-11199998)
chr1 (109-193)||(48273210-48273294)
chr1 (107-149)||(50391972-50392014)
chr1 (120-193)||(29865543-29865616)
[»] chr8 (4 HSPs)
chr8 (120-193)||(11806419-11806492)
chr8 (78-190)||(5072975-5073088)
chr8 (107-187)||(9433568-9433648)
chr8 (164-193)||(23125199-23125228)
[»] scaffold0542 (1 HSPs)
scaffold0542 (109-186)||(8812-8889)
[»] chr5 (3 HSPs)
chr5 (115-192)||(34714375-34714452)
chr5 (107-153)||(27856160-27856206)
chr5 (107-153)||(28296108-28296154)
[»] chr2 (3 HSPs)
chr2 (107-191)||(11615729-11615813)
chr2 (107-193)||(8252670-8252756)
chr2 (107-191)||(31022898-31022981)
[»] chr7 (1 HSPs)
chr7 (117-182)||(1440608-1440673)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 5 - 265
Target Start/End: Complemental strand, 28979179 - 28978919
Alignment:
Q  5 ttgttgagaagttcatatgccacgagagcagcaacaggttaatgtttcaaaatcgcaagagatgaagacgctccatctccacccaaaatcacaacgcctc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28979179 ttgttgagaagttcatatgccacgagagcagcaacaggttaatgtttcaaaatcgcaagagatgaagacgctccatctccacccaaaatcacaacgcctc 28979080  T
Q  105 aagtatatgagtcacctctcttatatatccaatattttacacattcataaatagtgtgagacttaaccactcacacttgaaacccaacagaatattctct 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28979079 aagtatatgagtcacctctcttatatatccaatattttacacattcataaatagtgtgagacttaaccactcacacttgaaacccaacaaaatattctct 28978980  T
Q  205 acttcttttcataatcctcaaacaagctaatggtttgtttaacagccttggggaattcagt 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28978979 acttcttttcataatcctcaaacaagctaatggtttgtttaacagccttagggaattcagt 28978919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 329 - 412
Target Start/End: Complemental strand, 28978855 - 28978772
Alignment:
Q  329 ctcattctaaagtgctaatatagatcatgctagttagcgtcccttgggcactagtttatgcaaagggcgagtgagtgatcacat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28978855 ctcattctaaagtgctaatatagatcatgctagttagcgtcccttgggcactagtttatgcaaagggtgagtgagtgatcacat 28978772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 106 - 248
Target Start/End: Original strand, 23270849 - 23270991
Alignment:
Q  106 agtatatgagtcacctctcttatatatccaatattttacacattcataaatagtgtgagacttaaccactcacacttgaaacccaacagaatattctcta 205  Q
    |||||||||||| ||| |||| |||||||||||||||||||||||||||| | |||| |||||||||||||||| || ||| |||  | ||| || ||||    
T  23270849 agtatatgagtcgcctttcttgtatatccaatattttacacattcataaacaatgtgggacttaaccactcacatttaaaatccataataatgttatcta 23270948  T
Q  206 cttcttttcataatcctcaaacaagctaatggtttgtttaaca 248  Q
    |||| ||||||||| |||||| |||| ||||||||||||||||    
T  23270949 cttcctttcataatgctcaaataagccaatggtttgtttaaca 23270991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 20142451 - 20142210
Alignment:
Q  1 ccacttgttgagaagttcatatgccacgagagcagcaacaggttaatgtttcaaaatcgcaagagatgaagacgctccatctccacccaaaatcacaacg 100  Q
    |||||||||||| ||| |  ||| |||||||||| |||||| | |||| ||||  | ||||||||||| |||| |  |||||||| ||||| ||| || |    
T  20142451 ccacttgttgaggagtccggatgtcacgagagcaacaacagatcaatgattcaggagcgcaagagatggagacccaacatctccatccaaactcataa-g 20142353  T
Q  101 cctcaagtatatgagtcacctctcttatatatccaatattttacacattcataaatagtgtgagacttaaccactcacacttgaaacccaacagaatatt 200  Q
     ||  ||||||||||||   | |||| |||||||||||||||||| ||||||||| | |||| ||||||  |||||||| || ||| |||  | ||| ||    
T  20142352 act--agtatatgagtc---tttcttgtatatccaatattttacatattcataaacaatgtgggacttagtcactcacatttaaaatccataataatgtt 20142258  T
Q  201 ctctacttcttttcataatcctcaaacaagctaatggtttgtttaaca 248  Q
     |||||||| ||||||||| |||||| |||||||||||||||||||||    
T  20142257 atctacttcctttcataatgctcaaataagctaatggtttgtttaaca 20142210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 31108191 - 31108263
Alignment:
Q  121 tctcttatatatccaatattttacacattcataaatagtgtgagacttaaccactcacacttgaaacccaaca 193  Q
    ||||||||||||||||||| |||  | |||||| | | |||||||||||| ||||||||||||||||| ||||    
T  31108191 tctcttatatatccaatatattattcgttcatagacaatgtgagacttaatcactcacacttgaaacctaaca 31108263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 23162010 - 23161955
Alignment:
Q  78 catctccacccaaaatcacaacgcctcaagtatatgagtcacctctcttatatatc 133  Q
    |||||||||||||||||  || || ||  |||||||||||||||||||||||||||    
T  23162010 catctccacccaaaatcttaaggcatcgggtatatgagtcacctctcttatatatc 23161955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 39854566 - 39854532
Alignment:
Q  109 atatgagtcacctctcttatatatccaatatttta 143  Q
    |||||||||| ||||||||||||||||||||||||    
T  39854566 atatgagtcatctctcttatatatccaatatttta 39854532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 11199998 - 11199914
Alignment:
Q  109 atatgagtcacctctcttatatatccaatattttacacattcataaatagtgtgagacttaaccactcacacttgaaacccaaca 193  Q
    |||||||||||||||||||||||||||| |||||||  |||||||   | |||||||||||||||||||||||| ||||||||||    
T  11199998 atatgagtcacctctcttatatatccaacattttacctattcataggcaatgtgagacttaaccactcacacttaaaacccaaca 11199914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 48273294 - 48273210
Alignment:
Q  109 atatgagtcacctctcttatatatccaatattttacacattcataaatagtgtgagacttaaccactcacacttgaaacccaaca 193  Q
    |||||||| |||| ||||||| |||| ||||||||||||| |||| ||  | ||||||||||||||||||||||| || ||||||    
T  48273294 atatgagttacctatcttataaatccgatattttacacatccatagatgatatgagacttaaccactcacacttggaatccaaca 48273210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 50391972 - 50392014
Alignment:
Q  107 gtatatgagtcacctctcttatatatccaatattttacacatt 149  Q
    ||||||||||||| | |||||||||||||| ||||||||||||    
T  50391972 gtatatgagtcacatatcttatatatccaacattttacacatt 50392014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 29865616 - 29865543
Alignment:
Q  120 ctctcttatatatccaatattttacacattcataaatagtgtgagacttaaccactcacacttgaaacccaaca 193  Q
    ||||||||||||||| | ||||||  || | ||| | | |||||||||||||||||| |||||||||| |||||    
T  29865616 ctctcttatatatcccacattttatccagtaatagacaatgtgagacttaaccactcgcacttgaaactcaaca 29865543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 11806492 - 11806419
Alignment:
Q  120 ctctcttatatatccaatattttacacattcataaatagtgtgagacttaaccactcacacttgaaacccaaca 193  Q
    |||||||||||||||||||||||||||||||||| | | |||| ||||||| ||||||||| || |||||||||    
T  11806492 ctctcttatatatccaatattttacacattcatatacaatgtgggacttaatcactcacacatgtaacccaaca 11806419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 190
Target Start/End: Complemental strand, 5073088 - 5072975
Alignment:
Q  78 catctccacccaaaatcacaacgcctcaagtatatgagtcacctctcttatatatccaatatttt-acacattcataaatagtgtgagacttaaccactc 176  Q
    ||||||||||||||| |  || || | | ||||||||| | |||||||||||||||||| ||||| || |||||||||    ||||||| ||||| ||||    
T  5073088 catctccacccaaaaccttaaggcattacgtatatgagacgcctctcttatatatccaacatttttacccattcataaccgatgtgagatttaactactc 5072989  T
Q  177 acacttgaaaccca 190  Q
    ||||||||||||||    
T  5072988 acacttgaaaccca 5072975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 9433568 - 9433648
Alignment:
Q  107 gtatatgagtcacctctcttatatatccaatattttacacattcataaatagtgtgagacttaaccactcacacttgaaac 187  Q
    ||||||||||||| ||||| ||||||| || |||||  ||||| |||||   | |||||||||||||||||||||||||||    
T  9433568 gtatatgagtcacatctctaatatatcaaacattttctacattgataaaatatatgagacttaaccactcacacttgaaac 9433648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 193
Target Start/End: Complemental strand, 23125228 - 23125199
Alignment:
Q  164 gacttaaccactcacacttgaaacccaaca 193  Q
    ||||||||||||||||||||||||||||||    
T  23125228 gacttaaccactcacacttgaaacccaaca 23125199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 8812 - 8889
Alignment:
Q  109 atatgagtcacctctcttatatatccaatattttacacattcataaatagtgtgagacttaaccactcacacttgaaa 186  Q
    |||||| ||||| |||||||||||  |  ||||||| ||||||||||   ||||||||||||||||||||||||||||    
T  8812 atatgaatcaccactcttatatattaatcattttactcattcataaaccatgtgagacttaaccactcacacttgaaa 8889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 34714452 - 34714375
Alignment:
Q  115 gtcacctctcttatatatccaatattttacacattcataaatagtgtgagacttaaccactcacacttgaaacccaac 192  Q
    |||| ||||||| ||||||||||||||||| ||||||||  |  |||| |||||||||||||||| || |||||||||    
T  34714452 gtcatctctcttctatatccaatattttacccattcatatgtgatgtgggacttaaccactcacattttaaacccaac 34714375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 27856206 - 27856160
Alignment:
Q  107 gtatatgagtcacctctcttatatatccaatattttacacattcata 153  Q
    ||||||||| |||||||||||||||||||| ||||||| ||||||||    
T  27856206 gtatatgagccacctctcttatatatccaacattttacccattcata 27856160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 28296108 - 28296154
Alignment:
Q  107 gtatatgagtcacctctcttatatatccaatattttacacattcata 153  Q
    ||||||| ||||||||||||||| || ||||||||||| ||||||||    
T  28296108 gtatatgggtcacctctcttatacattcaatattttactcattcata 28296154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 11615813 - 11615729
Alignment:
Q  107 gtatatgagtcacctctcttatatatccaatattttacacattcataaatagtgtgagacttaaccactcacacttgaaacccaa 191  Q
    ||||||| |||| |||| |||||||||||| ||||||    ||||||| |  ||||||||||||||||||||| |||||||||||    
T  11615813 gtatatgtgtcatctcttttatatatccaacattttatctgttcataagtgatgtgagacttaaccactcacatttgaaacccaa 11615729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 8252670 - 8252756
Alignment:
Q  107 gtatatgagtcacctctcttatatatccaatattttacacattcataaatagtgtgagacttaaccactcacacttgaaacccaaca 193  Q
    ||||| |||| ||||||||||||||||||| |||| ||  ||| |||||   ||| |||||||| |||| |||||||||| ||||||    
T  8252670 gtatacgagttacctctcttatatatccaacatttaacctatttataaacgatgtaagacttaatcactgacacttgaaatccaaca 8252756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 31022898 - 31022981
Alignment:
Q  107 gtatatgagtcacctctcttatatatccaatattttacacattcataaatagtgtgagacttaaccactcacacttgaaacccaa 191  Q
    |||||||  ||| ||||||| ||||||||| ||||||  |||||||| |   ||||||| |||||||||||||||| ||||||||    
T  31022898 gtatatggttcaactctcttgtatatccaacattttattcattcatagacgatgtgagatttaaccactcacactt-aaacccaa 31022981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 1440608 - 1440673
Alignment:
Q  117 cacctctcttatatatccaatattttacacattcataaatagtgtgagacttaaccactcacactt 182  Q
    ||||||||||||||||| |||||||||  |||| |||  |  ||||||||||||| ||||||||||    
T  1440608 cacctctcttatatatctaatattttatccatttataggtgatgtgagacttaacgactcacactt 1440673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University