View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_high_4 (Length: 635)
Name: NF7607_high_4
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 16 - 557
Target Start/End: Complemental strand, 7514324 - 7513783
Alignment:
| Q |
16 |
atgacaattattcactattttttatccgaacaaaaccatacattaaaccaaaagaaagaggtgattagcataaataactccattttttccgtaagctgta |
115 |
Q |
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| T |
7514324 |
atgacaattattcactattttttatccgaacaaaaccatacattaaaccaaaagaaagaggtgattagcataaataactccattttttccgtaagctgta |
7514225 |
T |
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| Q |
116 |
gtaaacaaaaaatcattgtgtaagaattcaggcaaaatgaaggctcattatcatatccactaattaatcaatcaattagagagttttaaaacgggtcatt |
215 |
Q |
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| T |
7514224 |
gtaaacaaaaaatcattgtgtaagaattcaggcaaaatgaaggctcattatcgtatccactaattaatcaatcaattagagagttttaaaacgggtcatt |
7514125 |
T |
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| Q |
216 |
acgggtcccacctaaataccacgtgtcgaacattgattggacatcgacctgatttagcatttaccaactttacacccaacaacttttctcaccctctc-t |
314 |
Q |
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| T |
7514124 |
acgggtcccacctaaataccacgtgtcgaacattgattggacatcgacctgatttagcatttaccaactttatacccaacaacttttctcaccctctctt |
7514025 |
T |
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| Q |
315 |
tcccaattgaaacgctttccaaattacggagcttcggatccaaaccatttagcttcgttatccgaacctgcgtcttcgttgaaaatttttcacacttatt |
414 |
Q |
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| T |
7514024 |
tcacaattgaaacgctttccaaattacggagcttcggatccaaaccatttagcttcgttatccgaacctgcgtcttcgttgaaaatttttcacacttatt |
7513925 |
T |
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| Q |
415 |
tttcttcgatcatcatcactttatctcaaacgcgccacaaaccctaaacgcgtgcgtgatttcacaaacgcgcnnnnnnnncagaatcagcnnnnnnngc |
514 |
Q |
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| T |
7513924 |
tttcttcgatcatcatcactttatctcaaacgcgccacaaaccctaaacgcgtgcgtgatttcacaaacgcgc-tttttttcagaatcagttttttttgc |
7513826 |
T |
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| Q |
515 |
ttcaatggtgcagcttgttcttcgtcactgtgagtttcctgca |
557 |
Q |
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| T |
7513825 |
ttcaatggtgcagcttgttcttcgtcactgtgagtttcctgca |
7513783 |
T |
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