View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_high_45 (Length: 364)
Name: NF7607_high_45
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_high_45 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 43626789 - 43626443
Alignment:
| Q |
1 |
gactagtgaaggtccaaactagtcctctagnnnnnnnncattaacatctatttggtctatgaaaattaaaggtactgatctaaggtacattaccagctta |
100 |
Q |
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| T |
43626789 |
gactagtgaaggtccaaactagtcctctagaaaaaaaacattaacatctatatggtctatgaaaattaaaggtactgatctaaggtacattaccagctta |
43626690 |
T |
|
| Q |
101 |
gctagatgggcataaaacaaagcagaaagaggtgtttgttcagcaggtttgagaaccatggtgcacccagcagctaaggaagggctaactttggtgaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43626689 |
gctagatgggcataaaacaaagcagaaagaggtgtttgttcagcaggtttgagaaccatggtgcacccagcagctaaggaagggctaactttggtgaaga |
43626590 |
T |
|
| Q |
201 |
aaactatagtgggagcattccatggaatgatgtgtcccacaacaccaattggttccatcagtgtgtatgcatggaattggccagaagattttaatacctc |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43626589 |
aaaccatagtgggagcattccatggaatgatgtgtcccacaacaccaattggttccatcagtgtgtatgcatggaattggccagaagattttaatacctc |
43626490 |
T |
|
| Q |
301 |
accatgaattttatcagcagcacctgcatagtaacgtagtgtatttg |
347 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43626489 |
accatgaattttatcagcagcacctgcatagtaacgtagtgtatttg |
43626443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 98 - 347
Target Start/End: Complemental strand, 43619314 - 43619065
Alignment:
| Q |
98 |
ttagctagatgggcataaaacaaagcagaaagaggtgtttgttcagcaggtttgagaaccatggtgcacccagcagctaaggaagggctaactttggtga |
197 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||| | |
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| T |
43619314 |
ttagctagatgagcataaaacaaagcagatagaggtgtttgctcagcaggtttgacgaccatggtgcacccagcagctaagcaagggctaaccttgacaa |
43619215 |
T |
|
| Q |
198 |
agaaaactatagtgggagcattccatggaatgatgtgtcccacaacaccaattggttccatcagtgtgtatgcatggaattggccagaagattttaatac |
297 |
Q |
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|||| | ||||||| ||||| ||||| |||||||| |||||||||||||||||||||| ||| || |||||||| | | | | ||||||||| |
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| T |
43619214 |
agaacagggaagtgggaaagttccaaggaataatgtgtccaacaacaccaattggttccatcaatgtataagcatggaactctcttgcaacttttaatac |
43619115 |
T |
|
| Q |
298 |
ctcaccatgaattttatcagcagcacctgcatagtaacgtagtgtatttg |
347 |
Q |
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||| ||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
43619114 |
ctctccatgaattttatcagctgcacctgcatagtaacgaagtgtatttg |
43619065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 32408371 - 32408448
Alignment:
| Q |
97 |
cttagctagatgggcataaaacaaagcagaaagaggtgtttgttcagcaggtttgagaaccatggtgcacccagcagc |
174 |
Q |
| |
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|||||| ||||| ||||||||||||||||| |||||||||||||||||||| || |||||||| || || |||||||| |
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| T |
32408371 |
cttagcaagatgagcataaaacaaagcagagagaggtgtttgttcagcaggcttaagaaccatagtacaaccagcagc |
32408448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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