View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7607_high_51 (Length: 341)
Name: NF7607_high_51
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_high_51 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 160 - 323
Target Start/End: Complemental strand, 7513548 - 7513385
Alignment:
| Q |
160 |
gttgagcttatgagcttcaagtgattggggcagaagaattgtatttgaataatcaagtgcttttgtgtttttgcgcattccagtataattgactatgaag |
259 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7513548 |
gttgagcttataagcttcaagtgattggggcagaagaattgtatttgaataatcaagtgcttttgtgtttttgcgcattccagtataattgactatgaag |
7513449 |
T |
|
| Q |
260 |
caccaacactggacacgacactggtaattatttgnnnnnnnntgaatttattgaatgtaattac |
323 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7513448 |
caccaaaactggacacgacactggtaattatttgaaaaaaaatgaatttattgaatgtaattac |
7513385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 7513686 - 7513582
Alignment:
| Q |
42 |
gtgaatctgtgtgtgcaattgtggaagcttttggggttgttttgttgaatgaaattgtgtttacgagattgaatttttatatgcttccgatcttgtgtga |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7513686 |
gtgaatctgtgtgtgcaattgtggaagcttttggagttgttttgttgaatgaaattgtgtttacgagattgaatttttatatgcttccgatcttgtgtga |
7513587 |
T |
|
| Q |
142 |
atttg |
146 |
Q |
| |
|
|||| |
|
|
| T |
7513586 |
ttttg |
7513582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University