View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_high_55 (Length: 326)
Name: NF7607_high_55
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_high_55 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 3 - 306
Target Start/End: Complemental strand, 366574 - 366269
Alignment:
| Q |
3 |
aacaaatatatgttttcttttgatccatgactttaggctaaaatgaaatgaaaaatatgaagaaactttaggagaggaaggaaaatgtctctaaccaatg |
102 |
Q |
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| T |
366574 |
aacaaatatattttttcttttgatccatgactttaggctaaaatgaaatgaaaaatatgaagaaactttaggagaggaaggaaaatgtctctaaccaatg |
366475 |
T |
|
| Q |
103 |
tctctaacacacacttgctagttgtctacgagagtgataggaagttaggcgtgtctgccctttaggaaggattaaataggagagagaatttgagagatag |
202 |
Q |
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| T |
366474 |
tctctaacacacacttgctagttgtctatgagagtgataggaagttaggcgtgtctgccctttaggaaggattaaataggagagagaaattgagagatag |
366375 |
T |
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| Q |
203 |
gagttatgagtgtc--aaacaattttggtacttcacctacatactaaattttcattcaaaatcctattttgacctattctgtatagatactaattttggt |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
366374 |
gagttatgagtgtcataaacaattttggtacttcacctacatactaaattttcattcaaaatcctattttgacctattctgtatagatactaattttggt |
366275 |
T |
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| Q |
301 |
ttatct |
306 |
Q |
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|||||| |
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| T |
366274 |
ttatct |
366269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 99 - 304
Target Start/End: Original strand, 4025856 - 4026065
Alignment:
| Q |
99 |
aatgtctctaacacacacttgctagttgtctacgagagtgataggaagttaggcgtgtctgccctttaggaaggattaaataggagagagaatttgagag |
198 |
Q |
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||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4025856 |
aatgtttctaacacaaacttgctagttgtctatgagagtgataggaagttaggcgtgtctgccctttaggaaggattaaataggagagagaatttgtgag |
4025955 |
T |
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| Q |
199 |
ataggagttatgagtgtc--aaacaattttggtacttcacctacatactaaattttcattcaaaatcctattttgacctattctgtatag--atactaat |
294 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
4025956 |
ataggagttatgagtgtcataaacaatttcggtacttcacctacatgctaaattttcattcaaaatcctattttgacctattttgtatagatatactaat |
4026055 |
T |
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| Q |
295 |
tttggtttat |
304 |
Q |
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|||||||||| |
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| T |
4026056 |
tttggtttat |
4026065 |
T |
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