View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7607_high_57 (Length: 312)

Name: NF7607_high_57
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7607_high_57
NF7607_high_57
[»] chr7 (2 HSPs)
chr7 (5-257)||(9453848-9454087)
chr7 (258-292)||(31109838-31109872)
[»] chr2 (2 HSPs)
chr2 (255-292)||(39812244-39812281)
chr2 (253-292)||(32246572-32246613)
[»] scaffold0127 (1 HSPs)
scaffold0127 (258-292)||(34205-34239)
[»] chr5 (1 HSPs)
chr5 (258-292)||(15044484-15044518)
[»] chr4 (2 HSPs)
chr4 (258-292)||(5732458-5732492)
chr4 (253-292)||(3813811-3813852)
[»] chr3 (1 HSPs)
chr3 (258-292)||(18656228-18656262)
[»] chr1 (2 HSPs)
chr1 (258-292)||(41386543-41386577)
chr1 (258-292)||(41398032-41398066)
[»] chr8 (2 HSPs)
chr8 (258-290)||(25328536-25328568)
chr8 (256-292)||(39785080-39785116)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 5 - 257
Target Start/End: Original strand, 9453848 - 9454087
Alignment:
Q  5 tggcggaaaaagcacataggtcacatgggcacctctaatgttacagaacactcgacaacaacacatgaacagcaggcccaacgacaaattaactcagctg 104  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  9453848 tggcggaaaaagcacataggtcacatgggcacctccaatgttacagaacactcgacaacaacacatgagcagcaggcccaacaacagattaactcagctg 9453947  T
Q  105 ctgttccggcagccacaaaagtagcaccaaaataatgatgcagaagatgaggtacgagaaacacaacttaataaggaaaacacttctttccattttgtac 204  Q
    |||||||||||||||||| ||||||  |||          ||||| ||||||||||||||||||||||||||||||||||||   |||| ||||||| ||    
T  9453948 ctgttccggcagccacaacagtagccacaa----------cagaaaatgaggtacgagaaacacaacttaataaggaaaaca---cttttcattttgcac 9454034  T
Q  205 ttgagaatgttacatatcagatcatgcggcctcacattgatgtcgttgataag 257  Q
    | ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9454035 tcgagaatgttacatatcagatcgtgcggcctcacattgatgtcgttgataag 9454087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 292
Target Start/End: Complemental strand, 31109872 - 31109838
Alignment:
Q  258 tgttgtgaatccggttccaaagaaaccttcacacc 292  Q
    |||||||||||||||||||||||||||||||||||    
T  31109872 tgttgtgaatccggttccaaagaaaccttcacacc 31109838  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 39812281 - 39812244
Alignment:
Q  255 aagtgttgtgaatccggttccaaagaaaccttcacacc 292  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39812281 aagtgttgtgaatccggttccaaagaaaccttcacacc 39812244  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 32246572 - 32246613
Alignment:
Q  253 ataagtgttgtgaatccggttc--caaagaaaccttcacacc 292  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  32246572 ataagtgttgtgaatccggttctacaaagaaaccttcacacc 32246613  T

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Target: scaffold0127 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 292
Target Start/End: Complemental strand, 34239 - 34205
Alignment:
Q  258 tgttgtgaatccggttccaaagaaaccttcacacc 292  Q
    |||||||||||||||||||||||||||||||||||    
T  34239 tgttgtgaatccggttccaaagaaaccttcacacc 34205  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 15044484 - 15044518
Alignment:
Q  258 tgttgtgaatccggttccaaagaaaccttcacacc 292  Q
    |||||||||||||||||||||||||||||||||||    
T  15044484 tgttgtgaatccggttccaaagaaaccttcacacc 15044518  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 5732458 - 5732492
Alignment:
Q  258 tgttgtgaatccggttccaaagaaaccttcacacc 292  Q
    |||||||||||||||||||||||||||||||||||    
T  5732458 tgttgtgaatccggttccaaagaaaccttcacacc 5732492  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 3813811 - 3813852
Alignment:
Q  253 ataagtgttgtgaatccggttc--caaagaaaccttcacacc 292  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  3813811 ataagtgttgtgaatccggttctacaaagaaaccttcacacc 3813852  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 18656228 - 18656262
Alignment:
Q  258 tgttgtgaatccggttccaaagaaaccttcacacc 292  Q
    |||||||||||||||||||||||||||||||||||    
T  18656228 tgttgtgaatccggttccaaagaaaccttcacacc 18656262  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 41386543 - 41386577
Alignment:
Q  258 tgttgtgaatccggttccaaagaaaccttcacacc 292  Q
    |||||||||||||||||||||||||||||||||||    
T  41386543 tgttgtgaatccggttccaaagaaaccttcacacc 41386577  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 41398032 - 41398066
Alignment:
Q  258 tgttgtgaatccggttccaaagaaaccttcacacc 292  Q
    |||||||||||||||||||||||||||||||||||    
T  41398032 tgttgtgaatccggttccaaagaaaccttcacacc 41398066  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 25328568 - 25328536
Alignment:
Q  258 tgttgtgaatccggttccaaagaaaccttcaca 290  Q
    |||||||||||||||||||||||||||||||||    
T  25328568 tgttgtgaatccggttccaaagaaaccttcaca 25328536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 39785116 - 39785080
Alignment:
Q  256 agtgttgtgaatccggttccaaagaaaccttcacacc 292  Q
    ||||||||||||| |||||||||||||||||||||||    
T  39785116 agtgttgtgaatctggttccaaagaaaccttcacacc 39785080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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