View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_high_58 (Length: 309)
Name: NF7607_high_58
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_high_58 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 2161497 - 2161777
Alignment:
| Q |
13 |
aatatgttatggcttgaataccaaacttcaaactagaacacaaagaatctaacaacatgaattcaaggacacaccagaaactttctttcgagtaggtaat |
112 |
Q |
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| T |
2161497 |
aataggttatggtttgaataccaaacttcaaacaagaaaacaaagaatctaataacattatttcaaggacacaccagaaattctctttcgagtcggtaac |
2161596 |
T |
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| Q |
113 |
tgagtaaattctacagctgttgaagcatctctctcaagcaattcctcttcagataggcctgcttgatcctttctgaatgctacagatgcaac--atggaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || || |
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| T |
2161597 |
tgagtaaattctacagctgttgaagcatctctctcaagcaattcctcttcagataggcctgcttgatcctttctgaaagctgcagatgcaacatatccaa |
2161696 |
T |
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| Q |
211 |
tgatcagaaaaagttccaagtaaagttcaaattctcaaaaagagatatgaaagacggtactcacggttgagatattgtaag |
291 |
Q |
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| T |
2161697 |
tgatcagaaaaagttccaagtaaagttcaaaatctcaaaaagagatatgaaagacggtactcacggttgagatattgtaag |
2161777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 2149520 - 2149602
Alignment:
| Q |
111 |
attgagtaaattctacagctgttgaagcatctctctcaagcaattcctcttcagataggcctgcttgatcctttctgaatgct |
193 |
Q |
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||||| |||| ||| || |||||||||||| |||||| |||||| ||||| |||| |||||||||||| |||||||||||| |
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| T |
2149520 |
attgaataaactcttcatctgttgaagcatttctctcttgcaatttctcttgggataagcctgcttgatcttttctgaatgct |
2149602 |
T |
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