View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7607_high_65 (Length: 288)
Name: NF7607_high_65
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_high_65 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 267
Target Start/End: Original strand, 10382920 - 10383171
Alignment:
| Q |
8 |
gacatcatcatatgcaaaattctcaaatcaaacatcctataccattcccacattccatatagcttttccttttccacaataatagagcacacacataata |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10382920 |
gacaacatcatatgcaaaattctcaaatcaaacatcctataccatt--------ccatatatcttttccttttccacaataatagcgcacacacataata |
10383011 |
T |
|
| Q |
108 |
atatacccacaaatgttgcaaatttcatgcaattatttacatgcaaaattcaaaccatataataacctcatcactatcacgctcactttctcaccccacc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10383012 |
atatacccacaaatgttgcaaatttcatgcaattatttacatgcaaaattcaaaccatataataacctcatcactatcacgctcactttctcaccccacc |
10383111 |
T |
|
| Q |
208 |
attccaatttctcaccccctcaacaaaccaccacaatccgccgatcaatgccgaccggcg |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10383112 |
attccaatttctcaccccctcaacaaaccaccacaatccgccgatcaatgccgaccggcg |
10383171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University