View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_high_66 (Length: 287)
Name: NF7607_high_66
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_high_66 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 29913222 - 29912953
Alignment:
| Q |
13 |
aaaatcttgattaggataatgttttgttgttgacaacatgaggacatttgttaaactcgataagagccacatgctaattgtcttttagaggattctaaat |
112 |
Q |
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| T |
29913222 |
aaaaccttgattaggataatgttttgttgttgacaacatgaggacatttgttaaactcgataagagccacatgctaattgtcttttagaggattctaaat |
29913123 |
T |
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| Q |
113 |
ttcttagat-cccatgtgatttgtaacgtg-aaattttaccaaacaaaagaaatatttagcaaacagtttatatagatgcttaaaataacacggtttatc |
210 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||| ||||| |
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| T |
29913122 |
ttcttagatccccatgtgatttgtaacgtgaaaattttaccaaacaaaagaaatattttataaacagcttatatagatacttaaaataacacggcttatc |
29913023 |
T |
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| Q |
211 |
ctaat------gcttaaaataataaaaattccaaaataaggagagtgaagtaattaattcaaaggaacta |
274 |
Q |
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| T |
29913022 |
ctattattttaacttaaaataacaaaaattccaaaataaggagagtgaagtaattaattcaaaggaacta |
29912953 |
T |
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