View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_high_67 (Length: 280)
Name: NF7607_high_67
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_high_67 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 2161520 - 2161254
Alignment:
| Q |
1 |
ttggtattcaagccataacatatttttgactgtgataacaaaacagaaacaaagatagcagaagaaggacttatgccatcgagatcgttttctgcaagag |
100 |
Q |
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| T |
2161520 |
ttggtattcaaaccataacctatttttgactgtgatgacaaaacagaaacaaaaatagcagaagaaggacttatgccatcgagatcgttttctgcaagag |
2161421 |
T |
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| Q |
101 |
ttagtaaggataaagctagtataagtggaaggaggggaatgattcttccttttcaacctctgtccctcacttttgatgaaatcagatatgctgtagacat |
200 |
Q |
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| T |
2161420 |
tcagtaaggataaaactagtataagtggaaggagaggcatggttcttccttttcaacctctatccctcacttttgatgaaatcagatacgctgtagacat |
2161321 |
T |
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| Q |
201 |
gccacaggtactttacatacttctaagatgttctatctcacaattcaattaccttttctattttcat |
267 |
Q |
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| T |
2161320 |
gcctcaggtactttacatacttctaagatgttctatctcacaattcaattagcctttctattttcat |
2161254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 2149336 - 2149269
Alignment:
| Q |
143 |
ttcttccttttcaacctctgtccctcacttttgatgaaatcagatatgctgtagacatgccacaggta |
210 |
Q |
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| T |
2149336 |
ttcttccttttcaacctctatccctaacttttgatgatatcacatattctgttgacatgccacaggta |
2149269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 49772431 - 49772475
Alignment:
| Q |
167 |
tcacttttgatgaaatcagatatgctgtagacatgccacaggtac |
211 |
Q |
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| T |
49772431 |
tcacttttgatgaaatcggatatgccgtggacatgccgcaggtac |
49772475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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