View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_high_68 (Length: 279)
Name: NF7607_high_68
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_high_68 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 11784130 - 11784367
Alignment:
| Q |
20 |
catcctaaggagcatagagctagaagctcattctttaactggtggtattttactatggttgcaggtgcctcggcaacacttttaatcttgacttatatac |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11784130 |
catcctaaggagcatagagctagaagctcattctttaactggtggtattttactatggttgcaggtgcctcggcaacacttttaatcttgagttatatac |
11784229 |
T |
|
| Q |
120 |
aagataactatagttgggttcttggatttggaataccttgtgttgtaatgattattgctttgactgttttcttgcttggaacaatgacctataggtttaa |
219 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11784230 |
aagataactatagttgggttcttggatttggaataccttgtgttgtaatgatcattgctttgattgttttcttgcttggaacaatgacctataggtttaa |
11784329 |
T |
|
| Q |
220 |
cattaaggataatgacaatagtccttttcttagaattg |
257 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
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| T |
11784330 |
cattaaggataatgacaattgtccttttcttagaattg |
11784367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 11697944 - 11698180
Alignment:
| Q |
21 |
atcctaaggagcatagagctagaagctcattctttaactggtggtattttactatggttgcaggtgcctcggcaacacttttaatcttgacttatataca |
120 |
Q |
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|
||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
11697944 |
atcctaaggagcacaaagctagaagctcattctttaattggtggtattttactatggttgcaggtgccgcggcaacactttcgatcttgacttatataca |
11698043 |
T |
|
| Q |
121 |
agataactatagttgggttcttggatttggaataccttgtgttgtaatgattattgctttgactgttttcttgcttggaacaatgacctataggtttaac |
220 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| ||||||| || || |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11698044 |
agataactatagttgggttcttggatttggaatcccttgtgttataatgatcatagccttgattgttttcttgcttggaacaatgacctataggtttaac |
11698143 |
T |
|
| Q |
221 |
attaaggataatgacaatagtccttttcttagaattg |
257 |
Q |
| |
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||||||||||| ||||| ||||||||||||||||||| |
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| T |
11698144 |
attaaggataaagacaagagtccttttcttagaattg |
11698180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 11787961 - 11788198
Alignment:
| Q |
20 |
catcctaaggagcatagagctagaagctcattctttaactggtggtattttactatggttgcaggtgcctcggcaacacttttaatcttgacttatatac |
119 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11787961 |
catcctaaggaacatagagctagaagctcattctttaattggtggtattttacaatggttgcaggtgcctcggcaacacttttaatcttgagttatatac |
11788060 |
T |
|
| Q |
120 |
aagataactatagttgggttcttggatttggaataccttgtgttgtaatgattattgctttgactgttttcttgcttggaacaatgacctataggtttaa |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| |||||||||| ||||||| || || ||||||||||| |
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| T |
11788061 |
aagataactatagttgggttgttggatttggaataccttgtgttgttatgatcattgctttgattgttttcttgattggaactatcacatataggtttaa |
11788160 |
T |
|
| Q |
220 |
cattaaggataatgacaatagtccttttcttagaattg |
257 |
Q |
| |
|
||| || |||||| |||| ||||| ||||||||||||| |
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|
| T |
11788161 |
catcaatgataataacaagagtccctttcttagaattg |
11788198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 11800128 - 11800365
Alignment:
| Q |
20 |
catcctaaggagcatagagctagaagctcattctttaactggtggtattttactatggttgcaggtgcctcggcaacacttttaatcttgacttatatac |
119 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11800128 |
catcctaaggaacatagagctagaagctcattctttaattggtggtattttacaatggttgcaggtgcctcggcaacacttttaatcttgagttatatac |
11800227 |
T |
|
| Q |
120 |
aagataactatagttgggttcttggatttggaataccttgtgttgtaatgattattgctttgactgttttcttgcttggaacaatgacctataggtttaa |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| |||||||||| ||||||| || || ||||||||||| |
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| T |
11800228 |
aagataactatagttgggttgttggatttggaataccttgtgttgttatgatcattgctttgattgttttcttgattggaactatcacatataggtttaa |
11800327 |
T |
|
| Q |
220 |
cattaaggataatgacaatagtccttttcttagaattg |
257 |
Q |
| |
|
||| || |||||| |||| ||||| ||||||||||||| |
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| T |
11800328 |
catcaatgataataacaagagtccctttcttagaattg |
11800365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 11676428 - 11676665
Alignment:
| Q |
20 |
catcctaaggagcatagagctagaagctcattctttaactggtggtattttactatggttgcaggtgcctcggcaacacttttaatcttgacttatatac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||| | | ||| |||| |||||||| ||||||| |
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| T |
11676428 |
catcctaaggagcatagagctagaagctctttctttaattggtggtattttactatgattgcaggttgcacatcaatacttacaatcttgaactatatac |
11676527 |
T |
|
| Q |
120 |
aagataactatagttgggttcttggatttggaataccttgtgttgtaatgattattgctttgactgttttcttgcttggaacaatgacctataggtttaa |
219 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||| | ||||||||||| ||| |||||||||| |
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| T |
11676528 |
aagataacattagttgggttcttggatttggaatcccttgtgttgtaatgatcattgctttgattgttttttggcttggaacaaggacatataggtttag |
11676627 |
T |
|
| Q |
220 |
cattaaggataatgacaatagtccttttcttagaattg |
257 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||| |
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| T |
11676628 |
cattaaggataatgacaagagtccctttcttagaattg |
11676665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 11684707 - 11684944
Alignment:
| Q |
20 |
catcctaaggagcatagagctagaagctcattctttaactggtggtattttactatggttgcaggtgcctcggcaacacttttaatcttgacttatatac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||| | | ||| |||| |||||||| ||||||| |
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|
| T |
11684707 |
catcctaaggagcatagagctagaagctctttctttaattggtggtattttactatgattgcaggttgcacatcaatacttacaatcttgaactatatac |
11684806 |
T |
|
| Q |
120 |
aagataactatagttgggttcttggatttggaataccttgtgttgtaatgattattgctttgactgttttcttgcttggaacaatgacctataggtttaa |
219 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||| | ||||||||||| ||| |||||||||| |
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|
| T |
11684807 |
aagataacattagttgggttcttggatttggaatcccttgtgttgtaatgatcattgctttgattgttttttggcttggaacaaggacatataggtttag |
11684906 |
T |
|
| Q |
220 |
cattaaggataatgacaatagtccttttcttagaattg |
257 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||| |
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| T |
11684907 |
cattaaggataatgacaagagtccctttcttagaattg |
11684944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 37 - 257
Target Start/End: Original strand, 11707668 - 11707888
Alignment:
| Q |
37 |
agctagaagctcattctttaactggtggtattttactatggttgcaggtgcctcggcaacacttttaatcttgacttatatacaagataactatagttgg |
136 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||| | | ||||||||| ||||||| ||||||||||||||| ||||||| |
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|
| T |
11707668 |
agctagaagctcattctttaattggtggtattttactatgattgcaggttgcacagcaacacttacgatcttgaactatatacaagataacattagttgg |
11707767 |
T |
|
| Q |
137 |
gttcttggatttggaataccttgtgttgtaatgattattgctttgactgttttcttgcttggaacaatgacctataggtttaacattaaggataatgaca |
236 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || ||||||| |||||| ||||||||||||| ||| ||||||||||||||||||| |||||||| |
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|
| T |
11707768 |
gttcttggatttggaatcccttgtgttgtaatgatcatcgctttgattgtttttttgcttggaacaaggacatataggtttaacattaaggttaatgaca |
11707867 |
T |
|
| Q |
237 |
atagtccttttcttagaattg |
257 |
Q |
| |
|
| ||||| ||| ||||||||| |
|
|
| T |
11707868 |
agagtccctttattagaattg |
11707888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 27 - 255
Target Start/End: Original strand, 19722 - 19950
Alignment:
| Q |
27 |
aggagcatagagctagaagctcattctttaactggtggtattttactatggttgcaggtgcctcggcaacacttttaatcttgacttatatacaagataa |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| |||||||| |
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| T |
19722 |
aggagcatagagctagaagctcattctttaattggtggtattttactatggttgcaggggccacggcaacacttccgatcttgacttatattcaagataa |
19821 |
T |
|
| Q |
127 |
ctatagttgggttcttggatttggaataccttgtgttgtaatgattattgctttgactgttttcttgcttggaacaatgacctataggtttaacattaag |
226 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||| ||||| |||| | |||||||||| ||||||| ||| |||||||||||||||||| |
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|
| T |
19822 |
ctatagctgggttcttggatttggaataccttgtgttataatgatcattgccttgattattttcttgctcggaacaaggacatataggtttaacattaag |
19921 |
T |
|
| Q |
227 |
gataatgacaatagtccttttcttagaat |
255 |
Q |
| |
|
|||||| | || ||||||||||||||||| |
|
|
| T |
19922 |
gataataataagagtccttttcttagaat |
19950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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