View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_high_69 (Length: 278)
Name: NF7607_high_69
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_high_69 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 113 - 266
Target Start/End: Original strand, 13798513 - 13798666
Alignment:
| Q |
113 |
aaataattaaaagccaaaaagaatattaaatgtttgtatgaagaaaattaaagggattgttgagggaataccttggcttaacgggatcaagagatgattc |
212 |
Q |
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| T |
13798513 |
aaataattaaaagccaaaaagaatattaaatgtttgtatgaagaaaattaaagggattgttgagggaataccttggcttaacgggatcaagagatgattc |
13798612 |
T |
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| Q |
213 |
tttcaccacagttatctgattttccacgcatttgcaaaatattatatacatttt |
266 |
Q |
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| T |
13798613 |
tttcaccacagttatctgattttccacgcgtttgcaaaatattatatacatttt |
13798666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 13789406 - 13789504
Alignment:
| Q |
19 |
caaacacctgatctctgtcaaaaagaaaattaatgatgagatttgcaacgtatatacattggttactttcttatttctttctttgaactaaatgaaata |
117 |
Q |
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| T |
13789406 |
caaacacctgatctctgtcaaaaagaaaattaatgatgagatttgcaacgtatatacattggttactttcttatttctttctttgaactaaatgaaata |
13789504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 13798025 - 13798123
Alignment:
| Q |
19 |
caaacacctgatctctgtcaaaaagaaaattaatgatgagatttgcaacgtatatacattggttactttcttatttctttctttgaactaaatgaaata |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13798025 |
caaacacctgatctctgtcaaaaagaaaattaatgatgagatttgcaacgtatatacattggttactttcttatttctttctttgaactaaatgaaata |
13798123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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