View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_high_72 (Length: 260)
Name: NF7607_high_72
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_high_72 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 14782736 - 14782496
Alignment:
| Q |
1 |
caatctcattctctcagccatcatagtgaaacaaaaaatcactttttcaaatctcaattgtgttattcttctcacattgagttcaatcattcttgcattg |
100 |
Q |
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| T |
14782736 |
caatctcattctctcagccatcatagtgaaacaaaaaatcactttttcaaatctcaattgtgttattcttctcacattgagttcaatcattcttgcattg |
14782637 |
T |
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| Q |
101 |
aattctagtgctgagagaccaaaaggactaacgaaaaaagaatactttattggattcttttgcacccttggtgcagggttgttatttgcactttatttac |
200 |
Q |
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| T |
14782636 |
aattctagtagtgagagaccaaaaggactaacaaaaaaagaatactttattggattcttttgcacccttggtgcagggttgttatttgcactttatttac |
14782537 |
T |
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| Q |
201 |
cagttatggagaaggtttataaaaaggtttattgttacgaa |
241 |
Q |
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| T |
14782536 |
cagttatggagaaagtttataaaaaggtttattgttacgaa |
14782496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 14774840 - 14774623
Alignment:
| Q |
20 |
atcatagtgaaacaaaaaatcactttttcaaatctcaattgtgttattcttctcacattgagttcaatcattcttgcattgaattctagtgctgagagac |
119 |
Q |
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| T |
14774840 |
atcattgtgaagcaaaaaatcaccttttcaaatctcaactgtgtgatccttcttacactaagttctatccttcttgcattggattctagtaatgaaaaac |
14774741 |
T |
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| Q |
120 |
caaaaggactaacgaaaaaagaatactttattggattcttttgcacccttggtgcagggttgttatttgcactttatttaccagttatggagaaggttta |
219 |
Q |
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| T |
14774740 |
caaatgggctaactaaaaaagagtactttattggattcttttgcacaattggtgcagggttgttatttgcattgtatttaccagtgatggagaaggttta |
14774641 |
T |
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| Q |
220 |
taaaaaggtttattgtta |
237 |
Q |
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| T |
14774640 |
taaagatgtttattgtta |
14774623 |
T |
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