View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7607_high_81 (Length: 248)

Name: NF7607_high_81
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7607_high_81
NF7607_high_81
[»] chr4 (27 HSPs)
chr4 (8-215)||(25954702-25954909)
chr4 (8-215)||(34240945-34241152)
chr4 (11-193)||(1535726-1535908)
chr4 (8-193)||(37801255-37801440)
chr4 (8-193)||(49284309-49284494)
chr4 (8-171)||(52632470-52632633)
chr4 (52-193)||(36012176-36012317)
chr4 (8-187)||(35018888-35019066)
chr4 (9-171)||(46583554-46583716)
chr4 (79-188)||(16338209-16338318)
chr4 (53-193)||(17888541-17888683)
chr4 (8-119)||(16338309-16338420)
chr4 (8-193)||(31377341-31377526)
chr4 (77-184)||(20818587-20818695)
chr4 (52-193)||(12792222-12792365)
chr4 (53-183)||(54090176-54090307)
chr4 (83-184)||(10094393-10094495)
chr4 (100-182)||(47084056-47084138)
chr4 (125-193)||(36851378-36851446)
chr4 (53-181)||(11054448-11054581)
chr4 (52-184)||(46473988-46474122)
chr4 (77-179)||(9742538-9742641)
chr4 (53-149)||(322584-322682)
chr4 (53-184)||(35322704-35322837)
chr4 (52-179)||(50328790-50328919)
chr4 (77-179)||(19124743-19124846)
chr4 (100-148)||(5780790-5780838)
[»] chr7 (20 HSPs)
chr7 (7-193)||(44164734-44164920)
chr7 (8-193)||(34707068-34707253)
chr7 (7-215)||(24320408-24320615)
chr7 (9-188)||(32876526-32876705)
chr7 (8-193)||(29238134-29238319)
chr7 (52-193)||(10576669-10576810)
chr7 (7-188)||(29555935-29556116)
chr7 (64-193)||(34259526-34259655)
chr7 (9-195)||(19334549-19334736)
chr7 (53-215)||(33057626-33057789)
chr7 (71-193)||(29981104-29981226)
chr7 (53-225)||(17303073-17303248)
chr7 (53-184)||(10334173-10334306)
chr7 (79-179)||(9770682-9770782)
chr7 (53-179)||(26284383-26284510)
chr7 (100-179)||(15017817-15017896)
chr7 (53-148)||(41853128-41853226)
chr7 (134-179)||(43342488-43342533)
chr7 (6-42)||(29981256-29981292)
chr7 (7-35)||(34259483-34259511)
[»] chr8 (17 HSPs)
chr8 (8-193)||(35806746-35806931)
chr8 (6-193)||(22324546-22324733)
chr8 (8-193)||(21525310-21525495)
chr8 (8-190)||(42013824-42014006)
chr8 (11-193)||(42072383-42072565)
chr8 (12-185)||(26021351-26021525)
chr8 (52-186)||(33934367-33934501)
chr8 (77-187)||(24065294-24065404)
chr8 (52-184)||(19334778-19334911)
chr8 (56-184)||(16818973-16819105)
chr8 (108-193)||(16523158-16523243)
chr8 (110-182)||(16591377-16591449)
chr8 (52-179)||(2271196-2271318)
chr8 (77-183)||(43282852-43282959)
chr8 (77-171)||(21488087-21488181)
chr8 (53-179)||(10112042-10112170)
chr8 (77-142)||(34697431-34697497)
[»] chr5 (24 HSPs)
chr5 (14-193)||(6257401-6257580)
chr5 (7-188)||(23218436-23218617)
chr5 (8-193)||(37169024-37169209)
chr5 (8-193)||(38397550-38397735)
chr5 (7-188)||(39862483-39862664)
chr5 (53-193)||(16618561-16618701)
chr5 (11-186)||(15631568-15631744)
chr5 (8-179)||(10081096-10081268)
chr5 (53-193)||(8456954-8457096)
chr5 (56-179)||(614397-614522)
chr5 (52-184)||(36769074-36769207)
chr5 (53-193)||(11856290-11856432)
chr5 (52-193)||(27916133-27916277)
chr5 (77-184)||(9737981-9738091)
chr5 (53-181)||(25560330-25560460)
chr5 (77-193)||(29491405-29491520)
chr5 (74-184)||(33271270-33271380)
chr5 (53-181)||(42119617-42119747)
chr5 (81-184)||(6174769-6174874)
chr5 (77-184)||(3341120-3341227)
chr5 (82-193)||(10115185-10115297)
chr5 (77-184)||(29790219-29790325)
chr5 (79-193)||(10052491-10052606)
chr5 (100-148)||(19322058-19322106)
[»] chr6 (15 HSPs)
chr6 (8-193)||(24694642-24694827)
chr6 (8-193)||(9231845-9232030)
chr6 (52-190)||(14309792-14309930)
chr6 (9-193)||(13627494-13627677)
chr6 (82-195)||(1727922-1728035)
chr6 (8-105)||(11084562-11084659)
chr6 (52-184)||(27863694-27863828)
chr6 (53-187)||(28750647-28750783)
chr6 (80-205)||(13103097-13103223)
chr6 (112-195)||(24497563-24497646)
chr6 (53-150)||(11279536-11279634)
chr6 (77-179)||(34103706-34103808)
chr6 (77-150)||(11212692-11212765)
chr6 (130-185)||(11084664-11084719)
chr6 (108-148)||(8412717-8412757)
[»] chr2 (20 HSPs)
chr2 (8-193)||(14942035-14942220)
chr2 (11-193)||(42769749-42769931)
chr2 (11-193)||(40277279-40277461)
chr2 (8-188)||(14186434-14186614)
chr2 (8-187)||(19181500-19181679)
chr2 (53-193)||(29846439-29846579)
chr2 (53-179)||(6318463-6318592)
chr2 (52-184)||(14539704-14539838)
chr2 (52-148)||(3597903-3597999)
chr2 (52-215)||(33009666-33009832)
chr2 (52-174)||(41674716-41674841)
chr2 (52-160)||(1387312-1387421)
chr2 (74-184)||(43139763-43139875)
chr2 (53-184)||(28321703-28321836)
chr2 (53-179)||(40780050-40780179)
chr2 (8-172)||(3956523-3956688)
chr2 (53-148)||(23685406-23685503)
chr2 (100-179)||(2888085-2888164)
chr2 (145-193)||(3597881-3597929)
chr2 (53-132)||(32486239-32486320)
[»] chr1 (23 HSPs)
chr1 (10-192)||(3346740-3346922)
chr1 (8-185)||(48392405-48392580)
chr1 (8-179)||(7742784-7742955)
chr1 (8-193)||(42517285-42517474)
chr1 (52-193)||(49902464-49902605)
chr1 (19-193)||(5974951-5975125)
chr1 (8-171)||(29149561-29149724)
chr1 (5-193)||(10156007-10156195)
chr1 (52-193)||(47022698-47022839)
chr1 (7-171)||(23908236-23908400)
chr1 (53-207)||(10907625-10907781)
chr1 (56-193)||(38859849-38859988)
chr1 (108-215)||(42456624-42456731)
chr1 (77-197)||(30745364-30745485)
chr1 (77-197)||(30766815-30766936)
chr1 (74-179)||(5558327-5558431)
chr1 (113-178)||(37189697-37189762)
chr1 (52-179)||(26835332-26835461)
chr1 (78-179)||(26511639-26511739)
chr1 (77-180)||(30252748-30252853)
chr1 (77-177)||(13131917-13132017)
chr1 (53-178)||(14796871-14796998)
chr1 (53-178)||(14805745-14805872)
[»] chr3 (29 HSPs)
chr3 (9-187)||(8950501-8950679)
chr3 (8-193)||(44994959-44995145)
chr3 (11-188)||(40845913-40846090)
chr3 (9-193)||(13856052-13856236)
chr3 (53-193)||(21853194-21853334)
chr3 (7-193)||(32352798-32352984)
chr3 (3-181)||(5391405-5391583)
chr3 (8-215)||(23467473-23467671)
chr3 (53-193)||(3178699-3178840)
chr3 (52-184)||(10839380-10839514)
chr3 (53-184)||(1781757-1781890)
chr3 (53-184)||(43347336-43347468)
chr3 (62-184)||(22845362-22845484)
chr3 (57-179)||(54546904-54547027)
chr3 (53-179)||(19649377-19649506)
chr3 (53-193)||(20382514-20382655)
chr3 (53-182)||(36539627-36539758)
chr3 (77-179)||(8926786-8926889)
chr3 (77-184)||(46685784-46685890)
chr3 (78-186)||(51336231-51336339)
chr3 (52-219)||(6280325-6280492)
chr3 (52-179)||(33103738-33103866)
chr3 (63-153)||(47889731-47889823)
chr3 (122-183)||(27642726-27642787)
chr3 (52-145)||(48206848-48206943)
chr3 (108-184)||(39352246-39352321)
chr3 (121-181)||(36825965-36826025)
chr3 (100-148)||(791858-791906)
chr3 (57-184)||(19644327-19644458)
[»] scaffold0079 (2 HSPs)
scaffold0079 (79-188)||(54542-54651)
scaffold0079 (8-119)||(54440-54551)
[»] scaffold0045 (1 HSPs)
scaffold0045 (77-179)||(34457-34560)
[»] scaffold0086 (1 HSPs)
scaffold0086 (100-215)||(20800-20915)
[»] scaffold0016 (1 HSPs)
scaffold0016 (103-148)||(85547-85592)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 25954702 - 25954909
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    |||||||||||||||||||||||||||| ||||||         |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  25954702 cagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 25954801  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcctgaggtcgccgggc 207  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||| | |||||||||||    
T  25954802 taaagaaattgcccaatttataggagtttatataagaaattcataggaatttacacaagaaattgcaaaaaatttggcccggagcccggggtcgccgggc 25954901  T
Q  208 cttagaac 215  Q
    ||||||||    
T  25954902 cttagaac 25954909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 34240945 - 34241152
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    |||||||||||||||||||||||||||| ||||||         ||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  34240945 cagtggcggagccaggaatattgtaaagcccgggcaaaaaaaattttacaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 34241044  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcctgaggtcgccgggc 207  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| | |||||||||||    
T  34241045 taaagaaattgcccaatttataggggtttatataagaaattcatagggatctacacaagaaattgcaaaaaatttggcccggagcccggggtcgccgggc 34241144  T
Q  208 cttagaac 215  Q
    ||||||||    
T  34241145 cttagaac 34241152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 1535726 - 1535908
Alignment:
Q  11 tggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaa 110  Q
    ||||||||||||||||||||||||| ||||||         ||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||    
T  1535726 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaa 1535825  T
Q  111 agaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    |||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  1535826 agaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 1535908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 37801440 - 37801255
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    |||||||||||||||||||||||||||| ||||||         |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  37801440 cagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 37801341  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    ||||||| ||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  37801340 taaagaatttgcccaatttatagggatttatataaaaaattcatagaaatttacacaagaaattgcaaaaaatttagcccggagcc 37801255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 49284309 - 49284494
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    |||||||||||||||||||||||||||  ||||||         |||||||||||||||||||||||| ||||||||||| || ||||||||||||||||    
T  49284309 cagtggcggagccaggaatattgtaaaacccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaaacaaataataaaaaatg 49284408  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  49284409 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 49284494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 52632470 - 52632633
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    |||||||||||||||||||||||||||| ||||||         |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||    
T  52632470 cagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaatattaaaaaatg 52632569  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaatt 171  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  52632570 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaatt 52632633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 52 - 193
Target Start/End: Complemental strand, 36012317 - 36012176
Alignment:
Q  52 tttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcat 151  Q
    ||||||||||||||||| | | || |||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  36012317 tttgcaacacatttatatgacatacataaaaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 36012218  T
Q  152 agagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    || ||||||||||| |||||||||||||||||||||||||||    
T  36012217 agggatttacacaaaaaattgcaaaaaatttggcccgaagcc 36012176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 8 - 187
Target Start/End: Original strand, 35018888 - 35019066
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    |||||||||||||||||||||||||||| |||| |         ||||||||||||||||| || ||| ||||||||||| |||||||||||||||||||    
T  35018888 cagtggcggagccaggaatattgtaaagcccggacaaaaaaaaatttgcaacacatttataaggtgtacataagaaattgcaagcaaataataaaaaatg 35018987  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggccc 187  Q
    |||||||||| || |||||||| || |||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  35018988 taaagaaattacctaatttataagggtttatataagaaattcatag-gatttacacaagaaattgtaaaaaatttggccc 35019066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 46583716 - 46583554
Alignment:
Q  9 agtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgt 108  Q
    |||||||||| |||||||||||||||||||||||         ||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||||||    
T  46583716 agtggcggagtcaggaatattgtaaagtccgggcaaaaaaaaatttacaacacatttatatggcgtacataagaaattgcaagcaaataataaaaaatgt 46583617  T
Q  109 aaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaatt 171  Q
    |||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||    
T  46583616 aaagaaattgcctaatttataggggtttatataagaaattcatagggatttacacaaaaaatt 46583554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 16338318 - 16338209
Alignment:
Q  79 aagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaa 178  Q
    ||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||  |||||||||| ||||||||||||    
T  16338318 aagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaaa 16338219  T
Q  179 atttggcccg 188  Q
    | ||||||||    
T  16338218 aattggcccg 16338209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 193
Target Start/End: Complemental strand, 17888683 - 17888541
Alignment:
Q  53 ttgcaacacatttatagggcgt-atataagaaattgtaagcaaataataaaaaa-tgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    |||||||||||||||||||  | | ||||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||  ||||||||||||||||    
T  17888683 ttgcaacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattca 17888584  T
Q  151 tagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    |||  ||||||| ||||||||| ||||||||||| ||| ||||    
T  17888583 taggaatttacataagaaattgaaaaaaatttgggccggagcc 17888541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 16338420 - 16338309
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    ||||||||||||||| |||||||||||| ||||||          ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  16338420 cagtggcggagccagaaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 16338321  T
Q  108 taaagaaattgc 119  Q
    ||||||||||||    
T  16338320 taaagaaattgc 16338309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 31377341 - 31377526
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatag-ggcgtatataagaaattgtaagcaaataat-aaaaaa 105  Q
    ||||||||||||||||| |||||||||| ||||||         || ||||||||||||||| ||  || ||||||||||| ||||||||| | ||||||    
T  31377341 cagtggcggagccaggattattgtaaagcccgggcaaaaaaaaatt-gcaacacatttatagcggtttacataagaaattgcaagcaaatagttaaaaaa 31377439  T
Q  106 tgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    | ||||||||||||| ||||||||| |  ||||||||||||||||||| |||||||| ||||||||| ||||||||||| ||| ||||    
T  31377440 tctaaagaaattgcccaatttatagagggttatataagaaattcatagggatttacataagaaattg-aaaaaatttgggccggagcc 31377526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 20818587 - 20818695
Alignment:
Q  77 ataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaa 175  Q
    ||||||||||| || |||||||| ||||||| |||| |||||| | ||||||||||  |||||||||||||||||||| |||||||| ||||||||||||    
T  20818587 ataagaaattgcaaacaaataatcaaaaaatctaaaaaaattgaccaatttataggagtttatataagaaattcatagggatttacaaaagaaattgcaa 20818686  T
Q  176 aaaatttgg 184  Q
    |||||||||    
T  20818687 aaaatttgg 20818695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 193
Target Start/End: Complemental strand, 12792365 - 12792222
Alignment:
Q  52 tttgcaacacatttatagg-gcgtatataagaaattgtaagcaaataata-aaaaatgtaaagaaattgccaaatttatagggatttatataagaaattc 149  Q
    ||||||||||||||||||  |  |||||||||||||  |||||||||||  |||||| ||||| ||||||| ||||||||||| ||||||||||||||||    
T  12792365 tttgcaacacatttatagatgtttatataagaaatttcaagcaaataatctaaaaatctaaagtaattgcccaatttataggggtttatataagaaattc 12792266  T
Q  150 atagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    | ||| ||||||| |||||||| ||||||| |||| || |||||    
T  12792265 agagaaatttacataagaaattacaaaaaaattgggccaaagcc 12792222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 183
Target Start/End: Original strand, 54090176 - 54090307
Alignment:
Q  53 ttgcaacacatttatagggcgtatataagaaa-ttgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcat 151  Q
    ||||||||||| |||||||  || |||| ||| ||| |||||||||||||||||| |||| |||||||| |||||||| |  ||||||||| |||||||     
T  54090176 ttgcaacacatctatagggtttacataaaaaaattgcaagcaaataataaaaaatctaaaaaaattgcccaatttataagagtttatataataaattcag 54090275  T
Q  152 agagatttacacaagaaattgcaaaaaatttg 183  Q
    || |||||||| ||| ||||||||||||||||    
T  54090276 agggatttacaaaaggaattgcaaaaaatttg 54090307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 184
Target Start/End: Complemental strand, 10094495 - 10094393
Alignment:
Q  83 aattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatt 181  Q
    ||||| ||||||||||| ||||||| |||| ||||| || ||||||||||| ||||||||||||||||| ||| ||||||| |||||||| |||||||||    
T  10094495 aattgcaagcaaataatcaaaaaatctaaataaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattacaaaaaatt 10094396  T
Q  182 tgg 184  Q
    |||    
T  10094395 tgg 10094393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 47084056 - 47084138
Alignment:
Q  100 aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaattt 182  Q
    ||||||| |||||||||| || ||||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||    
T  47084056 aaaaaatctaaagaaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattgcaaaaaattt 47084138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 36851446 - 36851378
Alignment:
Q  125 ttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    |||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  36851446 ttataggggtttatataataaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 36851378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 11054448 - 11054581
Alignment:
Q  53 ttgcaacacatttatag-ggcgtatataagaaattgtaagcaaat-aataaaaaa---tgtaaagaaattgccaaatttatagggatttatataagaaat 147  Q
    ||||||||||||||||  ||  || ||||||||||| |||||||| |||||||||     |||||| |||||| ||||||||| | ||||||||||||||    
T  11054448 ttgcaacacatttataaaggtttacataagaaattgcaagcaaataaataaaaaaaatactaaagagattgcccaatttatagaggtttatataagaaat 11054547  T
Q  148 tcatagagatttacacaagaaattgcaaaaaatt 181  Q
    |||||| |||||||| ||||||||||||||||||    
T  11054548 tcatagggatttacataagaaattgcaaaaaatt 11054581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 184
Target Start/End: Original strand, 46473988 - 46474122
Alignment:
Q  52 tttgcaacacatttatagggcgt-atataagaaattgtaagcaaataata-aaaaatgtaaagaaattgccaaatttatagggatttatataagaaattc 149  Q
    ||||||||||||||||| ||  | | ||||||||||  |||||||||||| |||||| |||||||||||   |||||||| || ||||||||| ||||||    
T  46473988 tttgcaacacatttataaggatttacataagaaattacaagcaaataatacaaaaatctaaagaaattgtacaatttatatgggtttatataaaaaattc 46474087  T
Q  150 atagagatttacacaagaaattgcaaaaaatttgg 184  Q
    | ||  ||||||| |||||||||||||||||||||    
T  46474088 acaggaatttacataagaaattgcaaaaaatttgg 46474122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 9742641 - 9742538
Alignment:
Q  77 ataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaa 175  Q
    ||||||||||| | | ||||||| ||||||| ||||||||||||| ||||||||||| || |||||||||||||| ||  ||||||| ||||||||| ||    
T  9742641 ataagaaattgcatgaaaataatcaaaaaatctaaagaaattgcccaatttataggggttaatataagaaattcagaggaatttacataagaaattgtaa 9742542  T
Q  176 aaaa 179  Q
    ||||    
T  9742541 aaaa 9742538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 149
Target Start/End: Complemental strand, 322682 - 322584
Alignment:
Q  53 ttgcaacacatttatagg-gcgtatataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattc 149  Q
    |||||||||||||| ||| |  || ||||||||||| ||||||||||| ||||||| ||||||||||| | ||||||||||| ||||||||||||||||    
T  322682 ttgcaacacatttacaggtgtttacataagaaattgcaagcaaataatcaaaaaatttaaagaaattgtccaatttataggggtttatataagaaattc 322584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 184
Target Start/End: Complemental strand, 35322837 - 35322704
Alignment:
Q  53 ttgcaacacatttatagggcgt-atataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    ||||||||| |||||||||  | ||||||||||||| ||||||||||| ||||||| |||||||||||   ||||||||| | ||||||||||| |||||    
T  35322837 ttgcaacacttttataggggtttatataagaaattgcaagcaaataatcaaaaaatctaaagaaattgttcaatttatagaggtttatataagagattca 35322738  T
Q  151 tagagatttacacaagaaattgcaaaaaatttgg 184  Q
     ||| ||||| | || ||||| ||||||| ||||    
T  35322737 gagaaatttatataaaaaattacaaaaaaattgg 35322704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 179
Target Start/End: Original strand, 50328790 - 50328919
Alignment:
Q  52 tttgcaacacatttata-gggcgtatataagaaattgtaagcaaataataaaaaa-tgtaaagaaattgccaaatttatagggatttatataagaaattc 149  Q
    ||||||||||||||||| |||  || |||| |||||| |||  |||||||||||| | ||||||||||| | ||||||||| | |||||||||||||||     
T  50328790 tttgcaacacatttataagggtttacataaaaaattgcaagtgaataataaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaatta 50328889  T
Q  150 atagagatttacacaagaaattgcaaaaaa 179  Q
    | ||  ||||||| ||||||||||||||||    
T  50328890 agaggaatttacaaaagaaattgcaaaaaa 50328919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 19124846 - 19124743
Alignment:
Q  77 ataagaaattgtaagcaaataataaaaaa-tgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaa 175  Q
    ||||||||||||||| ||||||||||||| | |||||||||||   |||||| ||   ||||||||||||||||| ||  ||||||| ||||||||||||    
T  19124846 ataagaaattgtaagtaaataataaaaaaatttaaagaaattgatcaatttacagatgtttatataagaaattcagaggaatttacataagaaattgcaa 19124747  T
Q  176 aaaa 179  Q
    ||||    
T  19124746 aaaa 19124743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 5780838 - 5780790
Alignment:
Q  100 aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaatt 148  Q
    ||||||| ||||||||||||| |||||||| ||||||||||||||||||    
T  5780838 aaaaaatttaaagaaattgcccaatttataaggatttatataagaaatt 5780790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 44164920 - 44164734
Alignment:
Q  7 ccagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaat 106  Q
    ||||||||||||||||||||||| ||||||||||||         |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  44164920 ccagtggcggagccaggaatattctaaagtccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaat 44164821  T
Q  107 gtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  44164820 gtaaagaaattgcccaatttataggggtttatataagaaattcatagaaatttacacaagaaattgcaaaaaatttggcccggagcc 44164734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 34707068 - 34707253
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    |||||||||||||||||||||| ||||| ||||||          ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  34707068 cagtggcggagccaggaatattctaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 34707167  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  34707168 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 34707253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 24320615 - 24320408
Alignment:
Q  7 ccagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaat 106  Q
    |||||||||||| |||||||||||||||| ||||||         |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  24320615 ccagtggcggagtcaggaatattgtaaagcccgggcaaaaaaat-tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaat 24320517  T
Q  107 gtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcctgaggtcgccggg 206  Q
    |||||||||||||| ||||||||||| |||||||||||||||| |||  ||||||||||||||||||||||||||||||||| |||| | | ||| ||||    
T  24320516 gtaaagaaattgcccaatttataggggtttatataagaaattcgtaggaatttacacaagaaattgcaaaaaatttggcccggagcccgggttcgtcggg 24320417  T
Q  207 ccttagaac 215  Q
    |||||||||    
T  24320416 ccttagaac 24320408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 32876705 - 32876526
Alignment:
Q  9 agtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgt 108  Q
    ||||||||||||||||||||||||||| ||||||         |||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  32876705 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagagcgtacataagaaattgcaagcaaataataaaaaatgt 32876606  T
Q  109 aaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccg 188  Q
    |||||||||| | ||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  32876605 aaagaaattgtccaatttataggggtttatataagaaattcatagggatctacacaagaaattgcaaaaaatttggcccg 32876526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 29238319 - 29238134
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    ||||||||||| |||||||||||||||||||||||         ||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  29238319 cagtggcggagtcaggaatattgtaaagtccgggcaaaaaaaaatttgcaacacatttatagggcctacataagaaattgtaagcaaataataaaaaatg 29238220  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    ||||||||||  | ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||    
T  29238219 taaagaaattttccaatttttaggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaaattggcccggagcc 29238134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 52 - 193
Target Start/End: Original strand, 10576669 - 10576810
Alignment:
Q  52 tttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcat 151  Q
    ||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  10576669 tttgcaatacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 10576768  T
Q  152 agagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    || |||||||||||||||||||||||||||||||||| ||||    
T  10576769 agggatttacacaagaaattgcaaaaaatttggcccggagcc 10576810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 29556116 - 29555935
Alignment:
Q  7 ccagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaat 106  Q
    ||||||||||||||||||||||||||||| || |||         |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  29556116 ccagtggcggagccaggaatattgtaaagcccaggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaat 29556017  T
Q  107 gtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccg 188  Q
    |||||||||||| | ||||||||||| ||||||||||||||||||||  |||||||||||||||||  ||||| ||||||||    
T  29556016 gtaaagaaattgtccaatttataggggtttatataagaaattcataggaatttacacaagaaattgtcaaaaaattggcccg 29555935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 34259526 - 34259655
Alignment:
Q  64 ttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacac 163  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||    
T  34259526 ttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacac 34259625  T
Q  164 aagaaattgcaaaaaatttggcccgaagcc 193  Q
    |||||||||||||||| |||||||| ||||    
T  34259626 aagaaattgcaaaaaaattggcccggagcc 34259655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 19334736 - 19334549
Alignment:
Q  9 agtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaa--t 106  Q
    |||||||||||||||| |||||||||| ||||||         || |||||| ||||||||||  |||||||||||||| |||||||||||||||||  |    
T  19334736 agtggcggagccaggactattgtaaagcccgggcaaaaaaatatt-gcaacaaatttatagggtttatataagaaattgcaagcaaataataaaaaaaat 19334638  T
Q  107 gtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcctg 195  Q
     ||||||||||| | ||||||||||| ||||||||||||||||||||  ||||||| |||||||||||||||| |||| ||||| ||||    
T  19334637 ctaaagaaattgtccaatttataggggtttatataagaaattcataggtatttacataagaaattgcaaaaaaattgggccgaaacctg 19334549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 53 - 215
Target Start/End: Complemental strand, 33057789 - 33057626
Alignment:
Q  53 ttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaa-tgtaaagaaattgccaaatttatagggatttatataagaaattcat 151  Q
    ||||||||||||||||||   || ||||||||||| ||||||||||||||||| | |||||||||||   |||||||||||  |||||||||||||||||    
T  33057789 ttgcaacacatttataggatttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgttcaatttataggggattatataagaaattcat 33057690  T
Q  152 agagatttacacaagaaattgcaaaaaatttggcccgaagcctgaggtcgccgggccttagaac 215  Q
    || |||||||| ||||||||| |||||| |||| ||| |||| | |||||||||||| ||||||    
T  33057689 agggatttacataagaaattgaaaaaaaattgggccggagcccggggtcgccgggccatagaac 33057626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 193
Target Start/End: Complemental strand, 29981226 - 29981104
Alignment:
Q  71 gcgtatataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaat 170  Q
    ||||| ||||||||||| |||||||||||||||||| ||||||||||| | |||||||||   |||||||||||||||||||| ||||||||||||||||    
T  29981226 gcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgtccaatttatagaagtttatataagaaattcatagggatttacacaagaaat 29981127  T
Q  171 tgcaaaaaatttggcccgaagcc 193  Q
    ||||||| | |||||||| ||||    
T  29981126 tgcaaaagaattggcccggagcc 29981104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 225
Target Start/End: Complemental strand, 17303248 - 17303073
Alignment:
Q  53 ttgcaacacatttatag-ggcgtatataagaaattgtaagcaaataataaaaaa--tgtaaagaaattgccaaatttatagggatttatataagaaattc 149  Q
    ||||||||||||||||| ||  || ||||||||||| |||||||||||||||||  | ||||||||||||| |||||| | || ||||||||||||||||    
T  17303248 ttgcaacacatttatagtggtttacataagaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttacaagggtttatataagaaattc 17303149  T
Q  150 atagagatttacacaagaaattgcaaaaaatttggcccgaagcctgaggtcgccgggccttagaactacccctggt 225  Q
    ||||  ||||||| |||||||||||||||| ||||  || |||| | ||||||| |||| ||||||| ||| ||||    
T  17303148 ataggaatttacataagaaattgcaaaaaaattgggtcggagcccggggtcgccaggccatagaactgcccatggt 17303073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 10334173 - 10334306
Alignment:
Q  53 ttgcaacacatttatagggcgt-atataagaaattgtaagcaaataataaaaa-atgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    |||||||||||||||||||  | | ||||||||||| ||||||||| |||||| || ||||||||||||| |||||||| |  |||||||||||||||||    
T  10334173 ttgcaacacatttataggggtttacataagaaattgcaagcaaatattaaaaatatctaaagaaattgcccaatttataagagtttatataagaaattca 10334272  T
Q  151 tagagatttacacaagaaattgcaaaaaatttgg 184  Q
     ||  ||||||| |||||||||||||||| ||||    
T  10334273 gaggaatttacataagaaattgcaaaaaaattgg 10334306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 9770682 - 9770782
Alignment:
Q  79 aagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaa 178  Q
    ||||||||| ||||||||||| |||| | ||||||||||| | |||| |||| | |||||||||||||||||    |||||||| |||||||||||||||    
T  9770682 aagaaattgcaagcaaataatcaaaagtctaaagaaattgtccaattcatagtggtttatataagaaattcaggatgatttacataagaaattgcaaaaa 9770781  T
Q  179 a 179  Q
    |    
T  9770782 a 9770782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 179
Target Start/End: Complemental strand, 26284510 - 26284383
Alignment:
Q  53 ttgcaacacatttatagggcgt-atataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcat 151  Q
    |||||||||||||||||||  | | | ||||||||| ||| |||||||||||||| ||||||||||| | ||||||||   | || |||||||||||||     
T  26284510 ttgcaacacatttataggggtttacaaaagaaattgcaagaaaataataaaaaatctaaagaaattgtccaatttata-ctagttttataagaaattcag 26284412  T
Q  152 agaga-tttacacaagaaattgcaaaaaa 179  Q
    || || |||||| ||||||||||||||||    
T  26284411 agggattttacataagaaattgcaaaaaa 26284383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 15017817 - 15017896
Alignment:
Q  100 aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaa 179  Q
    ||||||| ||||||||||| | |||||||| |  ||||||||||||||||| ||  ||||||| ||||||||||||||||    
T  15017817 aaaaaatctaaagaaattgtccaatttatacgcgtttatataagaaattcagaggaatttacataagaaattgcaaaaaa 15017896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 148
Target Start/End: Original strand, 41853128 - 41853226
Alignment:
Q  53 ttgcaacacatttatag-ggcgtatataagaaattgtaagcaaataat--aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaatt 148  Q
    ||||||||||||||||| ||  ||||||  |||||| |||||||||||  ||||||| |||| |||||| | || ||||||| ||||| ||||||||||    
T  41853128 ttgcaacacatttatagaggtttatatagaaaattgcaagcaaataatcaaaaaaatctaaaaaaattgtccaacttataggaatttaaataagaaatt 41853226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 43342488 - 43342533
Alignment:
Q  134 tttatataagaaattcatagagatttacacaagaaattgcaaaaaa 179  Q
    ||||||||||||||||| ||  ||||||| ||||||||||||||||    
T  43342488 tttatataagaaattcagaggaatttacataagaaattgcaaaaaa 43342533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 29981292 - 29981256
Alignment:
Q  6 cccagtggcggagccaggaatattgtaaagtccgggc 42  Q
    ||||||||||||||||| ||||||||||||||| |||    
T  29981292 cccagtggcggagccagaaatattgtaaagtccaggc 29981256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 34259483 - 34259511
Alignment:
Q  7 ccagtggcggagccaggaatattgtaaag 35  Q
    |||||||||||||||||||||||||||||    
T  34259483 ccagtggcggagccaggaatattgtaaag 34259511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 35806746 - 35806931
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    |||||||||||||||||||||| ||||||||||||         |||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||    
T  35806746 cagtggcggagccaggaatattctaaagtccgggcaaaaaaaaatttgcaacacatttatagggtgtacataagaaattgcaagcaaataataaaaaatg 35806845  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35806846 taaagaaattgcccaatttataggggtttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccggagcc 35806931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 193
Target Start/End: Original strand, 22324546 - 22324733
Alignment:
Q  6 cccagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaa 105  Q
    |||||||||||||||||||||||||||||| ||||||          ||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  22324546 cccagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 22324645  T
Q  106 tgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||    
T  22324646 tgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattacaaaaaatttggcccggagcc 22324733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 21525310 - 21525495
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    |||||| ||||||||||||||||||||||||||||         |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  21525310 cagtggtggagccaggaatattgtaaagtccgggcaaaaacaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 21525409  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    ||||||||||| | ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||    
T  21525410 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttgacccggagcc 21525495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 42013824 - 42014006
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    ||||||||||||| | |||||||||||| ||||||          || |||||||||||||||||||| ||||||||||| ||||||||||||||||||     
T  42013824 cagtggcggagcctgaaatattgtaaagcccgggcaaaaaaaaaatttcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaata 42013923  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaa 190  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42013924 taaagaaattgcccaatttataggagtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccgaa 42014006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 42072383 - 42072565
Alignment:
Q  11 tggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaa 110  Q
    ||||||||||||||||||||||||| ||||||         |||||||||||||||||  |  || ||||||||||| ||||||||||||||||||||||    
T  42072383 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatattgtttacataagaaattgcaagcaaataataaaaaatgtaa 42072482  T
Q  111 agaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    |||||||| | ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||    
T  42072483 agaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaaattggcccggagcc 42072565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 26021351 - 26021525
Alignment:
Q  12 ggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaa-aatgtaa 110  Q
    ||||||| ||||||||||||||||  |||||         |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||    
T  26021351 ggcggagtcaggaatattgtaaagctcgggcaaaacaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaaatgtaa 26021450  T
Q  111 agaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggc 185  Q
    ||||||| || ||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  26021451 agaaattacccaatttataggggtttatataagaaattcatagggatttacaaaagaaattgcaaaaaatttggc 26021525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 52 - 186
Target Start/End: Complemental strand, 33934501 - 33934367
Alignment:
Q  52 tttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcat 151  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||||||||||    
T  33934501 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgcccaatttataggggtttatataagaaattcat 33934402  T
Q  152 agagatttacacaagaaattgcaaaaaatttggcc 186  Q
    ||  ||||||| |||||||||||||||||||||||    
T  33934401 aggaatttacaaaagaaattgcaaaaaatttggcc 33934367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 24065294 - 24065404
Alignment:
Q  77 ataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaa 176  Q
    ||||||||||| |||||||||||||||||  ||||||||||||| ||||||||||  ||||||||||||||||||||||||||| |  ||||||||||||    
T  24065294 ataagaaattgcaagcaaataataaaaaagctaaagaaattgcccaatttataggagtttatataagaaattcatagagatttatatgagaaattgcaaa 24065393  T
Q  177 aaatttggccc 187  Q
    |  ||||||||    
T  24065394 agttttggccc 24065404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 184
Target Start/End: Original strand, 19334778 - 19334911
Alignment:
Q  52 tttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaa-aatgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    ||||||||| ||||||||||  || ||||||||||||||||||||||||||| ||| ||||||||||| | ||||||||| | ||||||||| |||||||    
T  19334778 tttgcaacatatttataggggttacataagaaattgtaagcaaataataaaacaatttaaagaaattgtctaatttatagaggtttatataaaaaattca 19334877  T
Q  151 tagagatttacacaagaaattgcaaaaaatttgg 184  Q
    ||   ||||| | |||||||||||||||||||||    
T  19334878 taagaatttatataagaaattgcaaaaaatttgg 19334911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 184
Target Start/End: Complemental strand, 16819105 - 16818973
Alignment:
Q  56 caacacatttatagggcgt-atataagaaattgtaagcaaataataaaaaatg---taaagaaattgccaaatttatagggatttatataagaaattcat 151  Q
    ||||||||||||||||  | |||||| |||||| ||||||||||||||| |     || ||||||| || ||||||||||| |||||||||||||||||     
T  16819105 caacacatttataggggtttatataaaaaattgcaagcaaataataaaatactagatagagaaattacccaatttataggggtttatataagaaattcaa 16819006  T
Q  152 agagatttacacaagaaattgcaaaaaatttgg 184  Q
     |||||||||| |||||||||||||||||||||    
T  16819005 ggagatttacaaaagaaattgcaaaaaatttgg 16818973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 16523158 - 16523243
Alignment:
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||| ||||||||||| ||| ||||    
T  16523158 taaagaagttgcccaatttatagggatttatataagaaattcatagggatttacatatgaaattgtaaaaaatttgggccggagcc 16523243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 16591449 - 16591377
Alignment:
Q  110 aagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaattt 182  Q
    ||||||||||| ||||||||| |||||||||||||||||| |||| ||||||| |||||||||||||||||||    
T  16591449 aagaaattgcccaatttatagtgatttatataagaaattcttagaaatttacataagaaattgcaaaaaattt 16591377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 179
Target Start/End: Original strand, 2271196 - 2271318
Alignment:
Q  52 tttgcaacacatttatagggcgtata--taagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattc 149  Q
    |||||||||||||||||||| || ||  ||||||||||||||       |||||||| |||||||||| || ||| ||||||| ||||||||||||||||    
T  2271196 tttgcaacacatttatagggggtttacataagaaattgtaag-------taaaaaatctaaagaaattacctaatatataggggtttatataagaaattc 2271288  T
Q  150 atagagatttacacaagaaattgcaaaaaa 179  Q
    |    |||||||| ||||||||||||||||    
T  2271289 agcatgatttacataagaaattgcaaaaaa 2271318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 43282959 - 43282852
Alignment:
Q  77 ataagaaattgtaagcaaataataaaaaatg-taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaa 175  Q
    ||||||||| | |||||||||||||||| |  ||| |||||| || ||||||||||||||||||||| ||||||| |   ||||||| ||||||||| ||    
T  43282959 ataagaaatagcaagcaaataataaaaatttctaatgaaattacccaatttatagggatttatataataaattcagaagaatttacataagaaattgtaa 43282860  T
Q  176 aaaatttg 183  Q
    ||||||||    
T  43282859 aaaatttg 43282852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 171
Target Start/End: Original strand, 21488087 - 21488181
Alignment:
Q  77 ataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaatt 171  Q
    ||||||||||| |||| |||||| ||||||| ||||||||||| | ||||||| ||| ||| ||||||||||||| ||  ||||||||||||||||    
T  21488087 ataagaaattgcaagc-aataataaaaaaatctaaagaaattgtccaatttatcggggtttctataagaaattcaaaggaatttacacaagaaatt 21488181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 179
Target Start/End: Original strand, 10112042 - 10112170
Alignment:
Q  53 ttgcaacacatttatagggcgt-atataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    |||||||| ||||||||||  | | ||||||||||| ||  ||||||| |||||||  |||||||||| | |||||||| |  ||||||||||||||| |    
T  10112042 ttgcaacatatttataggggtttacataagaaattgcaaataaataatcaaaaaattaaaagaaattgtccaatttataagagtttatataagaaattaa 10112141  T
Q  151 tagagatttacacaagaaattgcaaaaaa 179  Q
     ||  ||||||| || |||||||||||||    
T  10112142 gaggaatttacataaaaaattgcaaaaaa 10112170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 34697497 - 34697431
Alignment:
Q  77 ataagaaattgtaagcaaataataa-aaaatgtaaagaaattgccaaatttatagggatttatataa 142  Q
    ||||||||||| ||||||||||||| ||||  |||||||||| |  ||||||||| |||||||||||    
T  34697497 ataagaaattgcaagcaaataataaaaaaaattaaagaaatttctcaatttatagagatttatataa 34697431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 6257580 - 6257401
Alignment:
Q  14 cggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaaaga 113  Q
    |||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6257580 cggagccaggaatattgtaaagtccgggcaaaaaaaattttgcaacacatttatagggcgtatataagaaattgcaagcaaataataaaaaatgtaaaga 6257481  T
Q  114 aattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  6257480 aattgcccaatttataggggtttgtataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 6257401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 23218436 - 23218617
Alignment:
Q  7 ccagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaat 106  Q
    ||||||||||||||||||||||||||||| ||||||         |||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||    
T  23218436 ccagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggagtacataagaaattgcaagcaaataataaaaaat 23218535  T
Q  107 gtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccg 188  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  23218536 gtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaactttggcccg 23218617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 37169209 - 37169024
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    ||||||| |||||||||||||||||||| ||||||         ||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  37169209 cagtggcagagccaggaatattgtaaagcccgggcaaaaaaaaatttgccacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 37169110  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||    
T  37169109 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattgcaaaaaatttggcccggagcc 37169024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 38397550 - 38397735
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    |||||||||||||||||||||| ||||| | ||||          |||||||||||||||||| |||| ||||||||||| |||||||||||||||||||    
T  38397550 cagtggcggagccaggaatattataaagcctgggcaaaaaacaaattgcaacacatttataggacgtacataagaaattgcaagcaaataataaaaaatg 38397649  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  38397650 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 38397735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 39862664 - 39862483
Alignment:
Q  7 ccagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaat 106  Q
    |||| |||||||||||||||||||||||| | ||||         |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  39862664 ccagcggcggagccaggaatattgtaaagcctgggcaaaaaaaaatttgcaacacatttttagggcgtatataagaaattgcaagcaaataataaaaaat 39862565  T
Q  107 gtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccg 188  Q
     ||||||||||||| ||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  39862564 ctaaagaaattgcccaatttataggggtttatataagaaattcataggaatttacacaagaaattgcaaaaaaattggcccg 39862483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 53 - 193
Target Start/End: Complemental strand, 16618701 - 16618561
Alignment:
Q  53 ttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcata 152  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| |||||| | ||||||||||  |||||||||||||||||||    
T  16618701 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgtccaatttataggagtttatataagaaattcata 16618602  T
Q  153 gagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    | |||||||||||||||||| ||||||||||||||| ||||    
T  16618601 gggatttacacaagaaattgtaaaaaatttggcccggagcc 16618561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 15631568 - 15631744
Alignment:
Q  11 tggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaa 110  Q
    ||||||||||||||||||||||||| || |||         ||| |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  15631568 tggcggagccaggaatattgtaaagcccaggcaaaaaaaaatttacaacgcatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 15631667  T
Q  111 agaaattgccaaatttata-gggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcc 186  Q
    |||||||| | |||||||| ||| |||||||||||||||||||| |||||| ||||||||||| |||||||||||||    
T  15631668 agaaattgtccaatttatagggggtttatataagaaattcatagggatttatacaagaaattgtaaaaaatttggcc 15631744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 10081096 - 10081268
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagg-gcgtatataagaaattgtaagcaaataataaaaaa- 105  Q
    ||||||||||||||||| |||||||||| ||||||         || |||||||||||||||| |  || |||||||||||||||||||||||||||||     
T  10081096 cagtggcggagccaggattattgtaaagcccgggcaaaaaaaaatt-gcaacacatttataggagtttacataagaaattgtaagcaaataataaaaaaa 10081194  T
Q  106 tgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaa 179  Q
    | ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||| ||||||    
T  10081195 tctaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacataagaaattgaaaaaaa 10081268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 193
Target Start/End: Complemental strand, 8457096 - 8456954
Alignment:
Q  53 ttgcaacacatttatagggcgt-atataagaaattgtaagcaaataataaaaaa-tgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    |||||||| ||||||||||  | | ||||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||  ||||||||||||||||    
T  8457096 ttgcaacatatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattca 8456997  T
Q  151 tagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    ||| |||||||| ||||||||| ||||||||||| ||| ||||    
T  8456996 tagggatttacataagaaattgaaaaaaatttgggccggagcc 8456954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 614522 - 614397
Alignment:
Q  56 caacacatttatagg-gcgtatataagaaattgtaagcaaataataaaaaa-tgtaaagaaattgccaaatttatagggatttatataagaaattcatag 153  Q
    ||||||||||||||| |  || ||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| ||    
T  614522 caacacatttataggtgtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgccaaatttatagggatttatataaaaaattcagag 614423  T
Q  154 agatttacacaagaaattgcaaaaaa 179  Q
      ||||||| ||||||||||||||||    
T  614422 gaatttacataagaaattgcaaaaaa 614397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 36769207 - 36769074
Alignment:
Q  52 tttgcaacacatttatagggcgt-atataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    ||||||||||||||||||||  | | ||| ||||||| ||||||||||| |||||| ||||||||||||| |||| |||| | |||||||||||||||||    
T  36769207 tttgcaacacatttataggggtttacatatgaaattgcaagcaaataatcaaaaatctaaagaaattgcctaattcatagaggtttatataagaaattca 36769108  T
Q  151 tagagatttacacaagaaattgcaaaaaatttgg 184  Q
     ||  ||||||| |||||||||||||||||||||    
T  36769107 gaggaatttacataagaaattgcaaaaaatttgg 36769074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 193
Target Start/End: Original strand, 11856290 - 11856432
Alignment:
Q  53 ttgcaacacatttatagg-gcgtatataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    |||||||| ||||||||| |  || ||||||||||| ||| ||||||| ||||||| ||||||||||||| ||||||||| |||||||||||||||||||    
T  11856290 ttgcaacatatttataggagtttacataagaaattgcaagtaaataatcaaaaaatctaaagaaattgcccaatttatagtgatttatataagaaattca 11856389  T
Q  151 tagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
     || |||||||| |||||||| || |||| |||| ||||||||    
T  11856390 gagcgatttacataagaaattacagaaaacttgggccgaagcc 11856432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 52 - 193
Target Start/End: Original strand, 27916133 - 27916277
Alignment:
Q  52 tttgcaacacatttatagggcgt--atataagaaattgtaagcaaataataaaaaa-tgtaaagaaattgccaaatttatagggatttatataagaaatt 148  Q
    |||||||||||||||||||  ||  ||||||||||||| || |||||||||||||| | ||| ||||||||  ||||||||||  |||||||||||||||    
T  27916133 tttgcaacacatttataggaggtttatataagaaattgcaaacaaataataaaaaaatctaatgaaattgctcaatttataggagtttatataagaaatt 27916232  T
Q  149 catagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    || ||  ||||||| ||||||||||||||||||| | ||||||||    
T  27916233 cagaggaatttacataagaaattgcaaaaaatttaggccgaagcc 27916277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 9738091 - 9737981
Alignment:
Q  77 ataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagaga--tttacacaagaaattgc 173  Q
    ||||||||||| ||||||||||  ||||||| ||||||||||| | |||||||||||||||||||||||||||||||| ||  |||||| |||||||||     
T  9738091 ataagaaattgcaagcaaataaacaaaaaatctaaagaaattgtccaatttatagggatttatataagaaattcatagggatttttacataagaaattga 9737992  T
Q  174 aaaaaatttgg 184  Q
    |||||| ||||    
T  9737991 aaaaaaattgg 9737981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 25560460 - 25560330
Alignment:
Q  53 ttgcaacacatttata-gggcgtatataagaaattgtaagcaaataataaaa-aatgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    |||||||||||||||| |||  || ||||||||||| ||||||||||||||| ||| ||||||||||| | |||||||||   ||||||||||||||| |    
T  25560460 ttgcaacacatttatatgggtttacataagaaattgcaagcaaataataaaataatctaaagaaattgtccaatttatagatgtttatataagaaattta 25560361  T
Q  151 tagagatttacacaagaaattgcaaaaaatt 181  Q
    ||  |||||||| ||||||||| ||||||||    
T  25560360 taaggatttacataagaaattgaaaaaaatt 25560330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 29491520 - 29491405
Alignment:
Q  77 ataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaa 175  Q
    ||||||||||| ||||||||||| ||||||| ||||||| ||| | ||||||||||| || |||||||||||||||||| ||||||| ||||||||||||    
T  29491520 ataagaaattgcaagcaaataatcaaaaaatttaaagaa-ttgtccaatttataggggtt-atataagaaattcatagaaatttacataagaaattgcaa 29491423  T
Q  176 aaaatttggcccgaagcc 193  Q
    || |||||| | ||||||    
T  29491422 aagatttgggctgaagcc 29491405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 184
Target Start/End: Complemental strand, 33271380 - 33271270
Alignment:
Q  74 tatataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgc 173  Q
    |||||||||||||  || ||||||||||||||| ||||||||||| | ||||||||| | |||||||||||||||||  |  ||||||| |||||||||     
T  33271380 tatataagaaattacaaacaaataataaaaaatataaagaaattgtccaatttatagaggtttatataagaaattcaacggaatttacataagaaattgt 33271281  T
Q  174 aaaaaatttgg 184  Q
    |||||| ||||    
T  33271280 aaaaaaattgg 33271270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 42119617 - 42119747
Alignment:
Q  53 ttgcaacacatttatagggcgt-atataagaaattgtaagcaaataataaaaaa-tgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    |||||||||||||||||||  | | ||||||||||  || |||||||||||||| | ||||||||||| | ||||||||| | |||||||||||||||||    
T  42119617 ttgcaacacatttataggggtttacataagaaattacaaacaaataataaaaaaatctaaagaaattgtccaatttatagaggtttatataagaaattca 42119716  T
Q  151 tagagatttacacaagaaattgcaaaaaatt 181  Q
     ||  ||||||| |||||||| |||||||||    
T  42119717 gaggaatttacataagaaattacaaaaaatt 42119747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 184
Target Start/End: Original strand, 6174769 - 6174874
Alignment:
Q  81 gaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttata--gggatttatataagaaattcatagagatttacacaagaaattgcaaaaa 178  Q
    ||||||| |||||||||||||||||| ||||||||||| | ||||||||  ||| ||||||||||||||||| |   ||||||  |||||||| ||||||    
T  6174769 gaaattgcaagcaaataataaaaaatataaagaaattgtccaatttataggggggtttatataagaaattcagaagaatttacgtaagaaattacaaaaa 6174868  T
Q  179 atttgg 184  Q
    ||||||    
T  6174869 atttgg 6174874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 3341227 - 3341120
Alignment:
Q  77 ataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatat-aagaaattcatagagatttacacaagaaattgcaa 175  Q
    |||| |||||| ||||||||||| |||||  |||||||||| || |||||||||||  |||||| || ||||||| ||| ||||||| ||||||||||||    
T  3341227 ataaaaaattgaaagcaaataatcaaaaagctaaagaaatttcccaatttataggggattatataaaaaaattcagaga-atttacataagaaattgcaa 3341129  T
Q  176 aaaatttgg 184  Q
    |||||||||    
T  3341128 aaaatttgg 3341120  T

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Target: chr5; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 193
Target Start/End: Original strand, 10115185 - 10115297
Alignment:
Q  82 aaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaat 180  Q
    |||||| ||||||||||| ||||||| ||||||||||| | ||||||| ||| |||||||||||||| || ||  ||||||| || |||||||||||||     
T  10115185 aaattgcaagcaaataattaaaaaatctaaagaaattgtctaatttattggggtttatataagaaatccagaggaatttacataaaaaattgcaaaaaaa 10115284  T
Q  181 ttggcccgaagcc 193  Q
    |||| ||| ||||    
T  10115285 ttgggccggagcc 10115297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 29790325 - 29790219
Alignment:
Q  77 ataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaa 176  Q
    ||||||||||  ||||||||||| |||||  ||||||||||||| ||||||||  | |||||||||||||||||||   ||||||| ||||||||| |||    
T  29790325 ataagaaattaaaagcaaataatcaaaaac-taaagaaattgcccaatttataaaggtttatataagaaattcataagaatttacataagaaattgtaaa 29790227  T
Q  177 aaatttgg 184  Q
    || |||||    
T  29790226 aattttgg 29790219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 10052606 - 10052491
Alignment:
Q  79 aagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaa 177  Q
    ||||||||| |||||||||||  |||| | |||||||||| || |||||||||   |||||||||| | |||| || |||||||| ||||||||| ||||    
T  10052606 aagaaattgcaagcaaataatctaaaattttaaagaaattacctaatttatagacgtttatataagtagttcagagggatttacataagaaattgtaaaa 10052507  T
Q  178 aatttggcccgaagcc 193  Q
    || |||| ||| ||||    
T  10052506 aaattgggccggagcc 10052491  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 19322106 - 19322058
Alignment:
Q  100 aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaatt 148  Q
    ||||||| ||||| ||||||| ||||||||||  |||||||||||||||    
T  19322106 aaaaaatctaaagtaattgcccaatttataggagtttatataagaaatt 19322058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 24694827 - 24694642
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    |||||||||||||||||||||||||||| ||||||         |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  24694827 cagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 24694728  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  24694727 taaagaaattgcccaatttataggagtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 24694642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 9232030 - 9231845
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    |||||||||||||||||||||||||||| ||||||          |||||||||||||||||||| || ||||||||||| |||||||||||||||||||    
T  9232030 cagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatg 9231931  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  9231930 taaagaaattgcccaatttataggggtttatataagaaattcatagagatttacacaagaaattgcaaaaaaattggcccggagcc 9231845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 52 - 190
Target Start/End: Complemental strand, 14309930 - 14309792
Alignment:
Q  52 tttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcat 151  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14309930 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 14309831  T
Q  152 agagatttacacaagaaattgcaaaaaatttggcccgaa 190  Q
    || ||||||||||||||||||||||||||||||||||||    
T  14309830 agggatttacacaagaaattgcaaaaaatttggcccgaa 14309792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 13627494 - 13627677
Alignment:
Q  9 agtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgt 108  Q
    ||||||||||||||||||||| ||||| ||||||         ||||||||| ||||||||| |||| |||||||| |  ||||||||||||||||||||    
T  13627494 agtggcggagccaggaatattctaaagcccgggcaaaaaaat-tttgcaacatatttataggacgtacataagaaagtacaagcaaataataaaaaatgt 13627592  T
Q  109 aaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    |||||||||||  ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  13627593 aaagaaattgctcaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 13627677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 82 - 195
Target Start/End: Complemental strand, 1728035 - 1727922
Alignment:
Q  82 aaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatt 181  Q
    |||||| ||| |||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  1728035 aaattgcaaggaaataataaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatt 1727936  T
Q  182 tggcccgaagcctg 195  Q
    ||||||| ||||||    
T  1727935 tggcccggagcctg 1727922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 11084562 - 11084659
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaa 105  Q
    |||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  11084562 cagtggcggagccaggaatattgtaaagtccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 11084659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 184
Target Start/End: Original strand, 27863694 - 27863828
Alignment:
Q  52 tttgcaacacatttatagg-gcgtatataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    ||||||||||||||||||  |  || ||||||||||| || ||||||||||||||| ||||||||||| | |||||||| || |||||||||||||||||    
T  27863694 tttgcaacacatttatagatgtttacataagaaattgcaaacaaataataaaaaatctaaagaaattgtccaatttataagggtttatataagaaattca 27863793  T
Q  151 tagagatttacacaag-aaattgcaaaaaatttgg 184  Q
     ||| ||||||| ||| |||||||||||| |||||    
T  27863794 gagaaatttacataagaaaattgcaaaaagtttgg 27863828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 53 - 187
Target Start/End: Complemental strand, 28750783 - 28750647
Alignment:
Q  53 ttgcaacacatttatagg-gcgtatataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    |||||||||||||||| | |  || ||||||||||  ||||||||||| ||||||  ||||||||||||| ||||||||||| |||||||||||||||||    
T  28750783 ttgcaacacatttataagagtttacataagaaattacaagcaaataatcaaaaaaattaaagaaattgcccaatttataggggtttatataagaaattca 28750684  T
Q  151 tagagatttacacaagaaattgcaaaaaatttggccc 187  Q
     |   ||||||| |||||||||||||||| |||||||    
T  28750683 gaagaatttacataagaaattgcaaaaaaattggccc 28750647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 13103223 - 13103097
Alignment:
Q  80 agaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaa 178  Q
    |||||||| ||||||||||| ||||||| ||||||||||||| ||||||||  | ||||||||||||||||| ||  ||||||| || ||||||||||||    
T  13103223 agaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttataaaggtttatataagaaattcagaggaatttacataaaaaattgcaaaaa 13103124  T
Q  179 atttggcccgaagcctgaggtcgccgg 205  Q
    |||||  ||  |||||| |||||||||    
T  13103123 atttgagccagagcctggggtcgccgg 13103097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 195
Target Start/End: Complemental strand, 24497646 - 24497563
Alignment:
Q  112 gaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcctg 195  Q
    ||||||||| ||||||||||| ||||||||||||||||| ||  |||||||||| |||||||||||||||||| ||| ||||||    
T  24497646 gaaattgcccaatttataggggtttatataagaaattcagaggaatttacacaaaaaattgcaaaaaatttgggccggagcctg 24497563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 11279536 - 11279634
Alignment:
Q  53 ttgcaacacatttatagggcgt-atataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    ||||||||||||||||| |  | | ||||||||||| |||||||||||||||||| |||||||||| ||||||||||| | |||||||||| |||||||    
T  11279536 ttgcaacacatttatagagatttacataagaaattgcaagcaaataataaaaaatctaaagaaattaccaaatttataagaatttatataaaaaattca 11279634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 34103706 - 34103808
Alignment:
Q  77 ataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaa 176  Q
    ||||||||||| || ||||||||||||||| |||||||||| || |||||||| || ||||||||||||||||| ||  ||||||| || ||||| ||||    
T  34103706 ataagaaattgcaaacaaataataaaaaatctaaagaaatttcccaatttatacgggtttatataagaaattcagaggaatttacataataaattacaaa 34103805  T
Q  177 aaa 179  Q
    |||    
T  34103806 aaa 34103808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 11212692 - 11212765
Alignment:
Q  77 ataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    ||||||||||  ||||||||||| |||||| ||||||||||||| |||||||||||||||||| || |||||||    
T  11212692 ataagaaattacaagcaaataattaaaaatctaaagaaattgcccaatttatagggatttatagaaaaaattca 11212765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 11084664 - 11084719
Alignment:
Q  130 gggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggc 185  Q
    ||| ||||||||||||||||||||  |||||||||||||||||||||||| |||||    
T  11084664 ggggtttatataagaaattcataggaatttacacaagaaattgcaaaaaaattggc 11084719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 8412757 - 8412717
Alignment:
Q  108 taaagaaattgccaaatttatagggatttatataagaaatt 148  Q
    ||||||||||||| ||||||||||  |||||||||||||||    
T  8412757 taaagaaattgcccaatttataggcgtttatataagaaatt 8412717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 14942220 - 14942035
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    |||||||||||||||||||||||||||| ||||||         ||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||    
T  14942220 cagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttataaggcgtacataagaaattgcaagcaaataataaaaaatg 14942121  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  14942120 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 14942035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 42769931 - 42769749
Alignment:
Q  11 tggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaa 110  Q
    ||||||||||||||||||||||||| ||||||         ||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||    
T  42769931 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaa 42769832  T
Q  111 agaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    |||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  42769831 agaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 42769749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 40277461 - 40277279
Alignment:
Q  11 tggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaa 110  Q
    ||||||||||||||||||||||||| ||||||         |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  40277461 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 40277362  T
Q  111 agaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    |||||||||| ||||||||||||||||||||||||||| |||| |||||||| || |||||||||||||||||||||| ||||    
T  40277361 agaaattgcccaatttatagggatttatataagaaatttatagggatttacataaaaaattgcaaaaaatttggcccggagcc 40277279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 14186614 - 14186434
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    ||||||||||||||||||||||||||||  |||||         |||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||    
T  14186614 cagtggcggagccaggaatattgtaaagctcgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaagtg 14186515  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccg 188  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  14186514 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattacaaaaaatttggcccg 14186434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 8 - 187
Target Start/End: Original strand, 19181500 - 19181679
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    |||||||||||||||||||||||||||| |||| |         ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||    
T  19181500 cagtggcggagccaggaatattgtaaagcccggacaaaaaaaaatttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatg 19181599  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggccc 187  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  19181600 taaagaaattgcccaatttataggggtttatataagaaattcataggaatttacacaagaaattgcaaaaaatttggccc 19181679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 53 - 193
Target Start/End: Original strand, 29846439 - 29846579
Alignment:
Q  53 ttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcata 152  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||    
T  29846439 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcata 29846538  T
Q  153 gagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    | |||||||||||||||||||||||||||||||||| ||||    
T  29846539 gggatttacacaagaaattgcaaaaaatttggcccggagcc 29846579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 179
Target Start/End: Complemental strand, 6318592 - 6318463
Alignment:
Q  53 ttgcaacacatttataggg-cgtatataagaaattgtaagcaaataataaaaaa--tgtaaagaaattgccaaatttatagggatttatataagaaattc 149  Q
    ||||||||||||||||||| | || ||  ||||||| |||||||||||||||||  | ||||||||||||| ||||||||||||||||||||||||||||    
T  6318592 ttgcaacacatttataggggcttacatttgaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttatagggatttatataagaaattc 6318493  T
Q  150 atagagatttacacaagaaattgcaaaaaa 179  Q
    |||| |||||||| ||||||||| ||||||    
T  6318492 atagggatttacataagaaattgaaaaaaa 6318463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 14539838 - 14539704
Alignment:
Q  52 tttgcaacacatttatagg-gcgtatataagaaattgtaagcaaataataaaaaa-tgtaaagaaattgccaaatttatagggatttatataagaaattc 149  Q
    ||||||||||||||||||| |  |||||||||||||| ||| ||||||||||||| | ||||||||||||| |||||||||| |||||||||||||||||    
T  14539838 tttgcaacacatttataggtgtttatataagaaattgcaagaaaataataaaaaaatctaaagaaattgcctaatttataggaatttatataagaaattc 14539739  T
Q  150 atagagatttacacaagaaattgcaaaaaatttgg 184  Q
    | ||  | ||||| |||||||||||||||||||||    
T  14539738 agaggaaattacataagaaattgcaaaaaatttgg 14539704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 3597999 - 3597903
Alignment:
Q  52 tttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaatt 148  Q
    ||||||| ||||||||||||||||  |||||||||| ||| |||||||||||||||||||||||||| | |||||||||||||||| | ||||||||    
T  3597999 tttgcaatacatttatagggcgtacgtaagaaattgcaagtaaataataaaaaatgtaaagaaattgtccaatttatagggatttacacaagaaatt 3597903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 215
Target Start/End: Original strand, 33009666 - 33009832
Alignment:
Q  52 tttgcaacacatttata-gggcgtatataagaaattgtaagcaaataataa--aaaatgtaaagaaattgccaaatttatagggatttatataagaaatt 148  Q
    |||||||||| |||||| |||  || |||| |||||| |||||||||||||  ||||| ||||||||||| | |||||||| |||||||||||| |||||    
T  33009666 tttgcaacacgtttatatgggtttacataaaaaattgcaagcaaataataataaaaatctaaagaaattgtccaatttataaggatttatataacaaatt 33009765  T
Q  149 catagagatttacacaagaaattgcaaaaaatttggcccgaagcctgaggtcgccgggccttagaac 215  Q
    ||||| |||||| | ||||||||| |||||||||   ||| | |||| |||||||||||| ||||||    
T  33009766 catagggatttatataagaaattgtaaaaaatttaatccggaacctggggtcgccgggccatagaac 33009832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 174
Target Start/End: Complemental strand, 41674841 - 41674716
Alignment:
Q  52 tttgcaacacatttatagggcgt-atataagaaattgtaagcaaataat--aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaatt 148  Q
    ||||||||||||||||||||  | ||||||||||||| ||||||||| |  ||||||| ||||||||||| | |||||||| || ||||||||| |||||    
T  41674841 tttgcaacacatttatagggatttatataagaaattgcaagcaaatagttaaaaaaatctaaagaaattgtccaatttataagggtttatataaaaaatt 41674742  T
Q  149 catagagatttacacaagaaattgca 174  Q
    || ||||||||||| |||||||||||    
T  41674741 cagagagatttacataagaaattgca 41674716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 160
Target Start/End: Complemental strand, 1387421 - 1387312
Alignment:
Q  52 tttgcaacacatttata-gggcgtatataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    |||||||||||||| || |||  || ||||||||||| |||||||||||||||||| |||||||||| || ||||||||||| ||||| |||||||||||    
T  1387421 tttgcaacacatttgtaagggtttacataagaaattgcaagcaaataataaaaaatctaaagaaattacccaatttataggggtttatctaagaaattca 1387322  T
Q  151 tagagattta 160  Q
    ||| ||||||    
T  1387321 tagggattta 1387312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 74 - 184
Target Start/End: Original strand, 43139763 - 43139875
Alignment:
Q  74 tatataagaaattgtaagcaaataataaaaaa--tgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaatt 171  Q
    |||||||||||||| |||||||||||||||||  | ||||||||||||  ||||||||||| ||||||||||||||| | ||  | ||||| ||||||||    
T  43139763 tatataagaaattgcaagcaaataataaaaaaaatctaaagaaattgctcaatttataggggtttatataagaaattaagaggaacttacataagaaatt 43139862  T
Q  172 gcaaaaaatttgg 184  Q
    |||||||| ||||    
T  43139863 gcaaaaaaattgg 43139875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 184
Target Start/End: Complemental strand, 28321836 - 28321703
Alignment:
Q  53 ttgcaacacatttatagggcgt-atataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    |||||||||||||||||||  | ||||||||||||| ||||||||||| |||||||  || ||||||||| |||||||| || ||||||||||| |||||    
T  28321836 ttgcaacacatttataggggtttatataagaaattggaagcaaataatcaaaaaattcaatgaaattgcccaatttataagggtttatataagatattca 28321737  T
Q  151 -tagagatttacacaagaaattgcaaaaaatttgg 184  Q
      ||| ||||||| |||||||||||||||| ||||    
T  28321736 ggaga-atttacataagaaattgcaaaaaaattgg 28321703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 179
Target Start/End: Original strand, 40780050 - 40780179
Alignment:
Q  53 ttgcaacacatttatag-ggcgtatataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttataggga-tttatataagaaattc 149  Q
    |||||||| |||||||| ||  || ||||||||||| ||||||||||| ||||||| |||| |||||| |||||||||||||  ||||||||||||||||    
T  40780050 ttgcaacatatttatagcggtttacataagaaattgcaagcaaataattaaaaaatttaaaaaaattgtcaaatttatagggtgtttatataagaaattc 40780149  T
Q  150 atagagatttacacaagaaattgcaaaaaa 179  Q
    | ||  ||||||| |||||||| |||||||    
T  40780150 agaggaatttacataagaaattacaaaaaa 40780179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 172
Target Start/End: Original strand, 3956523 - 3956688
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatag-ggcgtatataagaaattgtaagcaaataataaaaaat 106  Q
    ||||||||||||||||| |||||||||| ||||||         || ||||||||||||||| ||  || ||  ||||||| ||||||||||||||||||    
T  3956523 cagtggcggagccaggattattgtaaagcccgggcaaaaaaaaatt-gcaacacatttatagaggtttacatttgaaattgcaagcaaataataaaaaat 3956621  T
Q  107 gt-aaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattg 172  Q
     | |||||||||| | |||||| |||| ||||||||| |||||||||| |||||||| || ||||||    
T  3956622 tttaaagaaattgtccaatttacaggggtttatataataaattcatagggatttacataaaaaattg 3956688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 148
Target Start/End: Complemental strand, 23685503 - 23685406
Alignment:
Q  53 ttgcaacacatttata-gggcgtatataagaaattgtaagcaaataataaaaa-atgtaaagaaattgccaaatttatagggatttatataagaaatt 148  Q
    |||||||| ||||||| |||  || ||||||||||| ||||||||||| |||| || |||| |||||| |||||||||| ||||||||||||||||||    
T  23685503 ttgcaacatatttataagggtttacataagaaattgcaagcaaataatcaaaatatataaataaattgtcaaatttataaggatttatataagaaatt 23685406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 2888085 - 2888164
Alignment:
Q  100 aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaa 179  Q
    ||||||| |||| ||||||   ||||||||||  ||||||||| ||||||||||||||||||| |||||||| |||||||    
T  2888085 aaaaaatctaaaaaaattgttcaatttataggagtttatataaaaaattcatagagatttacataagaaattacaaaaaa 2888164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 3597929 - 3597881
Alignment:
Q  145 aattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    |||| |||| |||||||||||||||||||||||||||||||||| ||||    
T  3597929 aatttatagggatttacacaagaaattgcaaaaaatttggcccggagcc 3597881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 32486239 - 32486320
Alignment:
Q  53 ttgcaacacatttatagg-gcgtatataagaaattgtaagcaaataa-taaaaaatgtaaagaaattgccaaatttataggg 132  Q
    |||||||||||||||| | |  |||||||||||||| |||||||||| |||||||| | || ||||| || |||||||||||    
T  32486239 ttgcaacacatttataagtgtttatataagaaattgcaagcaaataattaaaaaatcttaaaaaattacccaatttataggg 32486320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 3346740 - 3346922
Alignment:
Q  10 gtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgta 109  Q
    |||||||||||||||||||||||||| ||||||         |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  3346740 gtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 3346839  T
Q  110 aagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagc 192  Q
    ||||||||| | ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  3346840 aagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaacaaattgcaaaaaatttggcccgaagc 3346922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 48392580 - 48392405
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    |||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  48392580 cagtggcggagccaggaatattgtaaagtccgggcaaaaaaa--tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 48392483  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggc 185  Q
    ||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  48392482 taatgaaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaattgcaaaaaaattggc 48392405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 7742955 - 7742784
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    |||||||||||||||||||||||||||||||| ||         |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  7742955 cagtggcggagccaggaatattgtaaagtccgagcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 7742856  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaa 179  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||    
T  7742855 taaagaaattgcccaatttataggggtttatataagaaattcataaggatttacacaagaaattgcaaaaaa 7742784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 42517474 - 42517285
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    |||||||||||||||||||||||||||| ||| ||         |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  42517474 cagtggcggagccaggaatattgtaaagcccgtgcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 42517375  T
Q  108 taaagaaattgccaaatttataggg----atttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    ||||||||||||| |||||||||||     |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  42517374 taaagaaattgcccaatttataggggtttgtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 42517285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 52 - 193
Target Start/End: Original strand, 49902464 - 49902605
Alignment:
Q  52 tttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcat 151  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||    
T  49902464 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgccctatttataggggtttatataagaaattcat 49902563  T
Q  152 agagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    || |||||||||||||||||||||||||||||||||| ||||    
T  49902564 agggatttacacaagaaattgcaaaaaatttggcccggagcc 49902605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 5974951 - 5975125
Alignment:
Q  19 ccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaaagaaattg 118  Q
    ||||||||||||||||| ||||||         ||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  5974951 ccaggaatattgtaaagcccgggcaaaataaaatttacaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattg 5975050  T
Q  119 ccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    || ||||||||||| |||||||||||||||| ||| |||||||||||||||||| ||||||||||||||| ||||    
T  5975051 cctaatttataggggtttatataagaaattcttagggatttacacaagaaattgaaaaaaatttggcccggagcc 5975125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 29149724 - 29149561
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    |||||||||||||||||||||||||||||||||||         |||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |    
T  29149724 cagtggcggagccaggaatattgtaaagtccgggcaaaaaaaaatttgcaacacatgtatagggcgtacataagaaattgcaagcaaataataaaaaacg 29149625  T
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaatt 171  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||    
T  29149624 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaatt 29149561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 5 - 193
Target Start/End: Complemental strand, 10156195 - 10156007
Alignment:
Q  5 gcccagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaa 104  Q
    |||||||||||||||||| |||||||||||| | ||||         |||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  10156195 gcccagtggcggagccagaaatattgtaaagcctgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaa 10156096  T
Q  105 atgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    || ||||||||||| | |||||||||   ||||||||||||||||||||  |||||||||||||||||||||||| |||||||| ||||    
T  10156095 atataaagaaattgtccaatttatagaagtttatataagaaattcataggaatttacacaagaaattgcaaaaaaattggcccggagcc 10156007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 52 - 193
Target Start/End: Original strand, 47022698 - 47022839
Alignment:
Q  52 tttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcat 151  Q
    ||||||||| |||||||||||||| ||||||||||  ||| |||||||||||||| ||||||||||||| ||||||||||  ||||||||||||||||||    
T  47022698 tttgcaacatatttatagggcgtacataagaaattacaagtaaataataaaaaatataaagaaattgcctaatttataggagtttatataagaaattcat 47022797  T
Q  152 agagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  47022798 agagatttacacaagaaattgcaaaaaatttggcccggagcc 47022839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 7 - 171
Target Start/End: Original strand, 23908236 - 23908400
Alignment:
Q  7 ccagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaat 106  Q
    ||||||||||||||||||||||||||||| ||||||          ||||||||||||||||||||||| ||||||||||| |||||||||||||||||     
T  23908236 ccagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaac 23908335  T
Q  107 gtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaatt 171  Q
     ||||||||||| | ||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  23908336 ataaagaaattgtccaatttatagggatttatataagaaattcataggaatttacacaaaaaatt 23908400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 207
Target Start/End: Complemental strand, 10907781 - 10907625
Alignment:
Q  53 ttgcaacacatttatagg-gcgtatataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    |||||||||||||||||| |  || ||||||||||| ||||||||||| ||||||| ||||||||||| |  |||||||||| |||||||||||||||||    
T  10907781 ttgcaacacatttataggtgtctacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgtctgatttataggggtttatataagaaattca 10907682  T
Q  151 tagagatttacacaagaaattgcaaaaaatttggcccgaagcctgaggtcgccgggc 207  Q
     ||  ||||||| ||||||||||||||||||||| ||| |||| | |||||||||||    
T  10907681 gaggaatttacataagaaattgcaaaaaatttgggccggagcccggggtcgccgggc 10907625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 193
Target Start/End: Original strand, 38859849 - 38859988
Alignment:
Q  56 caacacatttatagggcgt-atataagaaattgtaagcaaataataaaaaa-tgtaaagaaattgccaaatttatagggatttatataagaaattcatag 153  Q
    ||||||||||||||||  | | ||||||||||| ||||||||||||||||| | |||| |||||||| ||||||||||| ||||||||||||||||||||    
T  38859849 caacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaaaaaattgcccaatttataggggtttatataagaaattcatag 38859948  T
Q  154 agatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
      ||||||| ||||||||| ||||||||||| ||| ||||    
T  38859949 gaatttacataagaaattgaaaaaaatttgggccggagcc 38859988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 42456624 - 42456731
Alignment:
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcctgaggtcgccgggc 207  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||  ||||||| ||||||| ||||||||||||| | |  ||| |||||||||||||    
T  42456624 taaagaaattgcccaatttataggggtttatataagaaattcataggaatttacataagaaatagcaaaaaatttgggcaggtgcccgaggtcgccgggc 42456723  T
Q  208 cttagaac 215  Q
    | ||||||    
T  42456724 catagaac 42456731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 197
Target Start/End: Original strand, 30745364 - 30745485
Alignment:
Q  77 ataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaa 175  Q
    ||||||||||| ||| ||||||| ||||||| ||||||||||| | |||||||||||||||||| |||||||||| ||| ||||||| || |||||||||    
T  30745364 ataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaaaattgcaa 30745463  T
Q  176 aaaatttggcccgaagcctgag 197  Q
    || ||||||  || ||||||||    
T  30745464 aatatttgggtcggagcctgag 30745485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 197
Target Start/End: Original strand, 30766815 - 30766936
Alignment:
Q  77 ataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaa 175  Q
    ||||||||||| ||| ||||||| ||||||| ||||||||||| | |||||||||||||||||| |||||||||| ||| ||||||| || |||||||||    
T  30766815 ataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaaaattgcaa 30766914  T
Q  176 aaaatttggcccgaagcctgag 197  Q
    || ||||||  || ||||||||    
T  30766915 aatatttgggtcggagcctgag 30766936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 5558327 - 5558431
Alignment:
Q  74 tatataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgc 173  Q
    |||||| ||||||| ||||||||||| |||||| ||||||||||| | ||||||||||| ||||||||||||||||  | || |||||| ||||||||||    
T  5558327 tatatatgaaattgcaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattcgga-aggtttacataagaaattgc 5558425  T
Q  174 aaaaaa 179  Q
    ||||||    
T  5558426 aaaaaa 5558431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 37189697 - 37189762
Alignment:
Q  113 aaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaa 178  Q
    |||||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  37189697 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgcaaaaa 37189762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 179
Target Start/End: Original strand, 26835332 - 26835461
Alignment:
Q  52 tttgcaacacatttata-gggcgtatataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattc 149  Q
    ||||||||||||||||| |||  || || |||||||| ||||||||||| ||||||| |||| ||||||   ||||||||||  ||||||||||||||||    
T  26835332 tttgcaacacatttatatgggtttacatgagaaattgcaagcaaataatcaaaaaatctaaaaaaattgttcaatttataggagtttatataagaaattc 26835431  T
Q  150 atagagatttacacaagaaattgcaaaaaa 179  Q
    |||   ||||||| || |||||||||||||    
T  26835432 atatgaatttacataataaattgcaaaaaa 26835461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 26511739 - 26511639
Alignment:
Q  78 taagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaa 177  Q
    |||||||||||||| ||||||| |||||| ||||||||||    |||||| ||| ||||||||||||||||||  | | |||||| ||||||||||||||    
T  26511739 taagaaattgtaagtaaataatcaaaaatttaaagaaattattcaatttacaggaatttatataagaaattca-gggggtttacataagaaattgcaaaa 26511641  T
Q  178 aa 179  Q
    ||    
T  26511640 aa 26511639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 30252853 - 30252748
Alignment:
Q  77 ataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatat-aagaaattcatagagatttacacaagaaattgca 174  Q
    ||||||||||| ||||||||||| ||||||| ||||||| ||| | ||||||||||||||||||| || ||||||| | | ||||| | || ||||||||    
T  30252853 ataagaaattgcaagcaaataatcaaaaaatctaaagaagttgtctaatttatagggatttatataaaaaaattcagaaaaatttatataaaaaattgca 30252754  T
Q  175 aaaaat 180  Q
    ||||||    
T  30252753 aaaaat 30252748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 13131917 - 13132017
Alignment:
Q  77 ataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaa 176  Q
    ||||||||||| ||| | ||||  |||||  ||||||||||| | ||||||||| ||||||||||| ||||| | ||  ||||||| |||||||| ||||    
T  13131917 ataagaaattgcaaggagataagtaaaaagctaaagaaattgtccaatttatagtgatttatataaaaaatttagaggaatttacataagaaattacaaa 13132016  T
Q  177 a 177  Q
    |    
T  13132017 a 13132017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 14796871 - 14796998
Alignment:
Q  53 ttgcaacacatttata-gggcgtatataagaaattgtaagcaaataata-aaaaatgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    |||||| ||||||||| |||  || ||||||||||| ||||||||| |  |||||| ||||| ||| ||| |||||||| |  | |||||||||||||||    
T  14796871 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattca 14796970  T
Q  151 tagagatttacacaagaaattgcaaaaa 178  Q
     ||  ||||||| || ||||||||||||    
T  14796971 gaggaatttacataaaaaattgcaaaaa 14796998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 14805745 - 14805872
Alignment:
Q  53 ttgcaacacatttata-gggcgtatataagaaattgtaagcaaataata-aaaaatgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    |||||| ||||||||| |||  || ||||||||||| ||||||||| |  |||||| ||||| ||| ||| |||||||| |  | |||||||||||||||    
T  14805745 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattca 14805844  T
Q  151 tagagatttacacaagaaattgcaaaaa 178  Q
     ||  ||||||| || ||||||||||||    
T  14805845 gaggaatttacataaaaaattgcaaaaa 14805872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 187
Target Start/End: Complemental strand, 8950679 - 8950501
Alignment:
Q  9 agtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgt 108  Q
    |||||||||||||||||||||||||||| |||||         ||||||||| |||||||||||||| ||||||||||  ||||||||||||||||||||    
T  8950679 agtggcggagccaggaatattgtaaagttcgggcaaaaaaaaatttgcaacatatttatagggcgtacataagaaatttcaagcaaataataaaaaatgt 8950580  T
Q  109 aaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggccc 187  Q
    |||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  8950579 aaagaaattgcccaatttatagggatttatataagaaattcataggaatttacacaagaaattgcaaaaaatttggccc 8950501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 44995145 - 44994959
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    ||||||||||||||||||||| |||||| ||||||         |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  44995145 cagtggcggagccaggaatatagtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 44995046  T
Q  108 taaagaaattgccaaatttat-agggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    ||||||||||||| ||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  44995045 taaagaaattgcccaatttataaggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcc 44994959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 40846090 - 40845913
Alignment:
Q  11 tggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaa 110  Q
    ||||||||||||||||||||||||| ||||||         |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  40846090 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 40845991  T
Q  111 agaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccg 188  Q
    |||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  40845990 agaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattgcaaaaaatttgacccg 40845913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 13856052 - 13856236
Alignment:
Q  9 agtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgt 108  Q
    ||||||||||||||||||||||||||| || |||          ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  13856052 agtggcggagccaggaatattgtaaagcccaggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 13856151  T
Q  109 aaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    |||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||    
T  13856152 aaagaaattgtccaatttatagggatttatataagaaattcatagggatttacacaagaaattgaaaaaaatttggcccggagcc 13856236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 53 - 193
Target Start/End: Original strand, 21853194 - 21853334
Alignment:
Q  53 ttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcata 152  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  21853194 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggttttatataagaaattcata 21853293  T
Q  153 gagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    | |||||||||||||||||||||||||||||||||| ||||    
T  21853294 gggatttacacaagaaattgcaaaaaatttggcccggagcc 21853334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 7 - 193
Target Start/End: Original strand, 32352798 - 32352984
Alignment:
Q  7 ccagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaat 106  Q
    |||||| ||||| ||||||||||||||||  |||||         |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32352798 ccagtgacggagtcaggaatattgtaaagctcgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgtaagcaaataataaaaaat 32352897  T
Q  107 gtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||| |||||||| ||||    
T  32352898 gtaaagaaattgcctaatttataggggtttatataagaaattcatagggatttatacaagaaattgcaaaaaaattggcccggagcc 32352984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 181
Target Start/End: Original strand, 5391405 - 5391583
Alignment:
Q  3 aagcccagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaa 102  Q
    ||||||||||||||||||||||||||||||||| ||||||         |||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  5391405 aagcccagtggcggagccaggaatattgtaaagcccgggcaaaaaaaa-tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaa 5391503  T
Q  103 aaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattg-caaaaaatt 181  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||    
T  5391504 aaatgtaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgtcaaaaaatt 5391583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 23467671 - 23467473
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnnttt-gcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaat 106  Q
    |||||||||||||||||||||||||||| | ||||         ||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  23467671 cagtggcggagccaggaatattgtaaagcctgggcggaaaatttttttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaat 23467572  T
Q  107 gtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccgaagcctgaggtcgccggg 206  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||          |||||||||||||||| |||| | ||||||||||    
T  23467571 gtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca----------caaaaaatttggcccggagccgggggtcgccggg 23467482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 53 - 193
Target Start/End: Original strand, 3178699 - 3178840
Alignment:
Q  53 ttgcaacacatttatagg-gcgtatataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcat 151  Q
    |||||||| ||||||||| |  || ||| ||||||| |||||||||| ||||||  ||||||||||||| ||||||||| ||||||||||||||||||||    
T  3178699 ttgcaacatatttataggagtttacatacgaaattgcaagcaaataaaaaaaaaactaaagaaattgcccaatttatagagatttatataagaaattcat 3178798  T
Q  152 agagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    || |||||||||||||||||| ||||||||||| ||| ||||    
T  3178799 agggatttacacaagaaattgaaaaaaatttgggccggagcc 3178840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 10839514 - 10839380
Alignment:
Q  52 tttgcaacacatttatagg-gcgtatataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattc 149  Q
    |||||||||||| |||||| |  || ||||||||||| ||||||||||| ||||||| ||||||||||||| ||||||||| | ||||||||||||||||    
T  10839514 tttgcaacacatgtataggtgtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttatagaggtttatataagaaattc 10839415  T
Q  150 atagagatttacacaagaaattgcaaaaaatttgg 184  Q
    | ||| ||||||| |||||||||||||||||||||    
T  10839414 agagaaatttacataagaaattgcaaaaaatttgg 10839380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 1781757 - 1781890
Alignment:
Q  53 ttgcaacacatttatagggcgt-atataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    |||||||||||||||||||  | | ||| ||||||| ||||||||||| ||||||| ||||||||||||| ||||||| ||| |||||||||||||||||    
T  1781757 ttgcaacacatttataggggtttacatacgaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttattggggtttatataagaaattca 1781856  T
Q  151 tagagatttacacaagaaattgcaaaaaatttgg 184  Q
     || |||||||| |||||||||||||||||||||    
T  1781857 gagggatttacataagaaattgcaaaaaatttgg 1781890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 184
Target Start/End: Complemental strand, 43347468 - 43347336
Alignment:
Q  53 ttgcaacacatttatagggcgtatataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcat 151  Q
    |||||||| | ||||||||  || ||||||||||| ||||||||||| ||||||| ||||||||||||| ||||| ||||| |||||||||||||||||     
T  43347468 ttgcaacataattatagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttgtaggggtttatataagaaattcag 43347369  T
Q  152 agagatttacacaagaaattgcaaaaaatttgg 184  Q
    ||  ||||||| |||||||||||||||||||||    
T  43347368 aggaatttacataagaaattgcaaaaaatttgg 43347336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 62 - 184
Target Start/End: Complemental strand, 22845484 - 22845362
Alignment:
Q  62 atttatagggcgtatataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttac 161  Q
    ||||||||||  ||||||| |||||| |||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| |     ||||||    
T  22845484 atttatagggtttatataaaaaattgcaagcaaataataaaaaatctaaagaaattgtcaaatttataggggtttatataagaaatttaggtgaatttac 22845385  T
Q  162 acaagaaattgcaaaaaatttgg 184  Q
    | |||||||||||||||||||||    
T  22845384 ataagaaattgcaaaaaatttgg 22845362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 54546904 - 54547027
Alignment:
Q  57 aacacatttatagggcgt-atataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagag 155  Q
    |||||||||||||||  | | ||||||||||||||||||||||| |||||| ||||||||||| | ||||||||||| ||||||||||||||||| ||      
T  54546904 aacacatttatagggatttacataagaaattgtaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattcaaagga 54547003  T
Q  156 atttacacaagaaattgcaaaaaa 179  Q
    ||||||  ||||||||||||||||    
T  54547004 atttacgtaagaaattgcaaaaaa 54547027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 179
Target Start/End: Complemental strand, 19649506 - 19649377
Alignment:
Q  53 ttgcaacacatttatagggcgt-atataagaaattgtaagcaaataat--aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattc 149  Q
    |||||||||||||||||||  | | ||||||||||| |||||||||||  ||||||| ||||||||||| | |||||||| || ||||||||||||||||    
T  19649506 ttgcaacacatttatagggaattacataagaaattgcaagcaaataatccaaaaaatctaaagaaattgtccaatttataagggtttatataagaaattc 19649407  T
Q  150 atagagatttacacaagaaattgcaaaaaa 179  Q
    |||| |||||||| |||||||| |||||||    
T  19649406 atagcgatttacataagaaattacaaaaaa 19649377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 193
Target Start/End: Original strand, 20382514 - 20382655
Alignment:
Q  53 ttgcaacacatttatagg-gcgtatataagaaattgtaagcaaataataaaaaa-tgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    ||||||| |||||||||| |  || ||||||||||| ||||||||||||||||| | |||||||||| || ||||||||||| |||||||||||||||||    
T  20382514 ttgcaacgcatttataggagtttacataagaaattgcaagcaaataataaaaaaatctaaagaaatttcccaatttataggggtttatataagaaattca 20382613  T
Q  151 tagagatttacacaagaaattgcaaaaaatttggcccgaagcc 193  Q
    ||| |||||||| ||||||||  ||||||||||| ||| ||||    
T  20382614 tagggatttacataagaaatt-aaaaaaatttgggccggagcc 20382655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 182
Target Start/End: Original strand, 36539627 - 36539758
Alignment:
Q  53 ttgcaacacatttatagggcgt-atataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    |||||||||||||||||||  | | ||| ||||||| || |||||||| ||||||| ||||||||||||| |||||||||||  |||||||||||||| |    
T  36539627 ttgcaacacatttataggggtttacataggaaattgcaaacaaataatcaaaaaatttaaagaaattgcccaatttataggggattatataagaaattta 36539726  T
Q  151 tagagatttacacaagaaattgcaaaaaattt 182  Q
    ||| |||||||| ||||||||||| |||||||    
T  36539727 tagggatttacataagaaattgcataaaattt 36539758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 8926786 - 8926889
Alignment:
Q  77 ataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaa 175  Q
    ||||||||||| ||||||||||| ||||||| || |||||||||||||||||||||| ||||||| ||||||||| ||  ||||||| | ||||||||||    
T  8926786 ataagaaattgcaagcaaataatcaaaaaatctacagaaattgccaaatttataggggtttatatcagaaattcagaggaatttacatatgaaattgcaa 8926885  T
Q  176 aaaa 179  Q
    ||||    
T  8926886 aaaa 8926889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 46685890 - 46685784
Alignment:
Q  77 ataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaa 176  Q
    ||||||||||| || ||||||||||||||| ||||||||||| ||||||||||||  ||||||||||||||| |  | |||||||| |||||| ||||||    
T  46685890 ataagaaattgcaaacaaataataaaaaatataaagaaattgtcaaatttataggagtttatataagaaatttagggggatttacataagaaa-tgcaaa 46685792  T
Q  177 aaatttgg 184  Q
    ||||||||    
T  46685791 aaatttgg 46685784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 51336231 - 51336339
Alignment:
Q  78 taagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattca-tagagatttacacaagaaattgcaaa 176  Q
    |||||||||| ||| |||||||||||||| ||||||||||| ||||||||||  ||||||||||| |||||||  ||| ||||||| || ||||||||||    
T  51336231 taagaaattgcaagtaaataataaaaaatttaaagaaattgtcaaatttataaagatttatataaaaaattcaggaga-atttacataaaaaattgcaaa 51336329  T
Q  177 aaatttggcc 186  Q
    ||| ||||||    
T  51336330 aaaattggcc 51336339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 6280492 - 6280325
Alignment:
Q  52 tttgcaacacatttatag-ggcgtatataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    |||||||||||||||||  ||  || |||| |||| | |||||||| || |||||| |||| |||||| ||||||||||| | |||||||||||||||||    
T  6280492 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 6280393  T
Q  151 tagagatttacacaagaaattgcaaaaaatttggcccgaagcctgaggtcgccgggccttagaactacc 219  Q
      || ||||||| ||||||||||| ||||||| | ||| || | | | ||||| |||||||||||||||    
T  6280392 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggctcgcc-ggccttagaactacc 6280325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 179
Target Start/End: Original strand, 33103738 - 33103866
Alignment:
Q  52 tttgcaacacatttatagggcgt-atataagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattca 150  Q
    ||||||||||||||||| ||  | | ||||||||||  |||||||||||||||||| |||| |||||  | |||||||||||| |||||||||||||| |    
T  33103738 tttgcaacacatttataaggatttacataagaaattacaagcaaataataaaaaatttaaataaattatccaatttatagggacttatataagaaattta 33103837  T
Q  151 tagagatttacacaagaaattgcaaaaaa 179  Q
      |  ||||||| ||||||||||||||||    
T  33103838 agggaatttacataagaaattgcaaaaaa 33103866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 47889731 - 47889823
Alignment:
Q  63 tttatagggcgtatataagaaattgt-aagcaaataataaaaaa-tgtaaagaaattgccaaatttatagggatttatataagaaattcatag 153  Q
    |||||||||  || || ||||||||| ||| ||||||||||||| | ||||||||||||| |||||||||| |||||||||||||||||||||    
T  47889731 tttatagggtttacattagaaattgtcaagtaaataataaaaaaatttaaagaaattgcccaatttataggaatttatataagaaattcatag 47889823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 27642726 - 27642787
Alignment:
Q  122 aatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttg 183  Q
    |||||||| |||||||||||||||||||| |  |||||||| ||||||||||||||||||||    
T  27642726 aatttataaggatttatataagaaattcaaaaggatttacataagaaattgcaaaaaatttg 27642787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 48206848 - 48206943
Alignment:
Q  52 tttgcaacacatttatagg-gcgtatataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaa 145  Q
    ||||||||||||||||| | |  || ||||||||||| ||| ||||||| ||||||| |||| |||||| ||||||||||||| ||||||||||||    
T  48206848 tttgcaacacatttataagtgtttacataagaaattgcaagtaaataatcaaaaaatctaaaaaaattgtcaaatttataggggtttatataagaa 48206943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 39352246 - 39352321
Alignment:
Q  108 taaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatttgg 184  Q
    |||||||||||  |||||||||| ||||||||||||||||| | ||| ||||| | ||||||||||||||| |||||    
T  39352246 taaagaaattgttaaatttatagagatttatataagaaatttagagaaattta-ataagaaattgcaaaaattttgg 39352321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 36826025 - 36825965
Alignment:
Q  121 aaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaatt 181  Q
    ||||||||| || ||||||| ||||||| | |||| |||||| ||||||||||||||||||    
T  36826025 aaatttataagggtttatatgagaaatttaaagaggtttacataagaaattgcaaaaaatt 36825965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 791858 - 791906
Alignment:
Q  100 aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaatt 148  Q
    ||||||| |||||||||| |  |||||||||| ||||||||||||||||    
T  791858 aaaaaatataaagaaattacgcaatttataggaatttatataagaaatt 791906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 184
Target Start/End: Complemental strand, 19644458 - 19644327
Alignment:
Q  57 aacacatttatagggcgt-atataagaaattgtaagcaaataat--aaaaaatgtaaagaaa-ttgccaaatttatagggatttatataagaaattcata 152  Q
    |||||||||||||||  | | ||||||||||| || ||||||||  ||||||| |||| ||| |||   ||||||||  ||||||||||| |||||||||    
T  19644458 aacacatttatagggaattacataagaaattgcaatcaaataatccaaaaaatctaaaaaaaattgttcaatttataaagatttatataaaaaattcata 19644359  T
Q  153 gagatttacacaagaaattgcaaaaaatttgg 184  Q
    |  ||||||| || ||||| ||||||| ||||    
T  19644358 gcaatttacataaaaaattacaaaaaaattgg 19644327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 54542 - 54651
Alignment:
Q  79 aagaaattgtaagcaaataataaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaa 178  Q
    ||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||  |||||||||| ||||||||||||    
T  54542 aagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaaa 54641  T
Q  179 atttggcccg 188  Q
    | ||||||||    
T  54642 aattggcccg 54651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 54440 - 54551
Alignment:
Q  8 cagtggcggagccaggaatattgtaaagtccgggcnnnnnnnnntttgcaacacatttatagggcgtatataagaaattgtaagcaaataataaaaaatg 107  Q
    ||||||||||||||| |||||||||||| ||||||          ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  54440 cagtggcggagccagaaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 54539  T
Q  108 taaagaaattgc 119  Q
    ||||||||||||    
T  54540 taaagaaattgc 54551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 34560 - 34457
Alignment:
Q  77 ataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaa 175  Q
    ||||||||||||||||||||||| ||||||| |||||||| || | ||||||||| |||||||||||  |||||| || |||||||| ||||||||||||    
T  34560 ataagaaattgtaagcaaataatcaaaaaatctaaagaaactgtccaatttatagagatttatataaagaattcagagggatttacataagaaattgcaa 34461  T
Q  176 aaaa 179  Q
    ||||    
T  34460 aaaa 34457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 20915 - 20800
Alignment:
Q  100 aaaaaatgtaaagaaattgccaaatttatagggatttatataagaaattcatagagatttacacaagaaattgcaaaaaa-tttggcccgaagcctgagg 198  Q
    ||||||| |||| |||||| | ||||||||| | ||||||||||||||||| ||  ||||||| |||||||||||||||| |||| || ||  |||| |     
T  20915 aaaaaatctaaaaaaattgtccaatttatagagctttatataagaaattcagaggaatttacataagaaattgcaaaaaaatttgaccggatccctg-gc 20817  T
Q  199 tcgccgggccttagaac 215  Q
    |||||||||||||||||    
T  20816 tcgccgggccttagaac 20800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 85547 - 85592
Alignment:
Q  103 aaatgtaaagaaattgccaaatttatagggatttatataagaaatt 148  Q
    |||||||||||||||| | ||||||||||||||| ||||| |||||    
T  85547 aaatgtaaagaaattgtccaatttatagggatttttataaaaaatt 85592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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