View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_low_1 (Length: 772)
Name: NF7607_low_1
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 510; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 175 - 696
Target Start/End: Complemental strand, 40397367 - 40396846
Alignment:
| Q |
175 |
cttcaattttgaattatgtctagcaagttggcccgtcaattaatttgtatatgatttatcgtcaaattaatccttaaattacatcatttatcgtcaaatt |
274 |
Q |
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| T |
40397367 |
cttcaattttgaattatgtctagcaagttggctcgtcaattaatttgtatatgatttattgtcaaattaatccttaaattacatcatttatcgtcaaatt |
40397268 |
T |
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| Q |
275 |
agttctaactacaagttaacaaaatgataaaatcgatcgatgtcattcaaaatcagggtcatttttatctattcacgaatttcataggtgtaaatgtttc |
374 |
Q |
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| T |
40397267 |
agttctaactacaagttaacaaaatgataaaatcgatcgatgtcattcaaaatcagggtcatttttatatattcacgaatttcataggtgtaaatgtttc |
40397168 |
T |
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| Q |
375 |
gagcttacaatggatggagacttaatccactactctcctccattaatttaatgaattaattacttttacatgaatattctcgaaaagttttgggagatac |
474 |
Q |
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| T |
40397167 |
gagcttacaatggatggagacttaatccactactctcctccattaatttaatgaattaattacttttacatgaatattctcgaaaagttttgggagatac |
40397068 |
T |
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| Q |
475 |
tctttgggatatccattggtaaaattcatgacactggctaactaactatagtagtattccttttgatgtgtaatcgcatttgatggttgtgatcttaact |
574 |
Q |
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| T |
40397067 |
tctttgggatatccattggtaaaattcatgacactggctaactaactatagtagtattccttttgatgtgtaatcgcatttgatggttgtgatcttaact |
40396968 |
T |
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| Q |
575 |
cctttggaataaagaagggaatgaacggtggataagaaagttgagtttgatgatggagaatatgctgtcatgcttaaacaagaacacctttgcaatttga |
674 |
Q |
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| T |
40396967 |
cctttggaataaagaagggaatgaacggtggataagaaagttgagtttgatgatggagaatatgctgtcatgcttaaacaagaacacctttgcaatttga |
40396868 |
T |
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| Q |
675 |
cctaggtatctcagtcactctt |
696 |
Q |
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| T |
40396867 |
cctaggtatctcagtcactctt |
40396846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 40397547 - 40397393
Alignment:
| Q |
1 |
aaatcacacagacctcgagaccaacgccgatgaaagaatcaatttttaagtcctttgagtttctttggttcgaaaagatttttatattgaaaaattgaat |
100 |
Q |
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| T |
40397547 |
aaatcacacagacctctagaccaacgccgatgaaagaatcaatttttaagtcctttgagtttctttgcttcgaaaagatttttatattgaaaaattgaat |
40397448 |
T |
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| Q |
101 |
aaatcacaaatttgcaagagtcagagatgtacaatcttaaaatttgcaaatagat |
155 |
Q |
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| T |
40397447 |
aaatcacaaatttgcaagagtcaaagatgtacaatcttaaaatttgcaaatagat |
40397393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 722 - 753
Target Start/End: Complemental strand, 40396827 - 40396796
Alignment:
| Q |
722 |
atagtagtactcaatttctaatgagtagtgtg |
753 |
Q |
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| T |
40396827 |
atagtagtactcaatttctaatgagtagtgtg |
40396796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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