View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_low_10 (Length: 561)
Name: NF7607_low_10
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 153 - 547
Target Start/End: Original strand, 386270 - 386663
Alignment:
| Q |
153 |
tagtatgcaagaatgaaaaatatatcttgtaaatgagtttcatacgtgttctttcaacatttctagttagagcattatctcgttgaaagtcaaaatgtat |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386270 |
tagtatgcaagaatgaaaaatatatcttgtaaatgagtttcatacgtgttctttcaacatttctagttagagcattatctcgttgaaagtcaaaatgtat |
386369 |
T |
|
| Q |
253 |
caaagaagccacaaattatcatctaaggtaactactatcctcgctcgaagtattcaaataatcaaaacttggaaaaagttccaccttgaagatttctcaa |
352 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
386370 |
caaagaagccacaaattatcatctaaggttactactatcctcgctcgaagtattcaaataatcaaaacttgtaaaaagttccac-ttgaagatttctcaa |
386468 |
T |
|
| Q |
353 |
gaagattcaacaacaacaattatctgtccaaaagtgtcaaagattcaaattaaaaagaaagccgtacgccgactcatgcctgaaataggaactcaagaat |
452 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386469 |
gaagattcaacaacaataattatctgtccaaaagtgtcaaagattcaaattaaaaagaaagccgtacgccgactcatgcctgaaataggaactcaagaat |
386568 |
T |
|
| Q |
453 |
acaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacagtttcaagctgttcttggcctttcaattgtgaaaatcttg |
547 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386569 |
acaacgaacttgaggaaaatcctcacaaggcttttttaaaaacaattacttcacagtttcaagctgttcttggcctttcaattgtgaaaatcttg |
386663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 386113 - 386245
Alignment:
| Q |
10 |
ggacccatgtaaactatatttcaatggcttatgccacaataaaggtagtgggatcataatattgcccttctggtgagtttttagttgacaggtttacatg |
109 |
Q |
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| T |
386113 |
ggacccatgtaaactatatttcaatggcttatgccacaataaaggtagtgggatcataatattgcccttctggtgagtttttagttgacaggtttac--- |
386209 |
T |
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| Q |
110 |
tatgtaacttacaaatcgatgaaacatgtgggttgttttaatatagta |
157 |
Q |
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| T |
386210 |
------------aaatcgatgaaacatgtgggttgttttaatatagta |
386245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 422 - 543
Target Start/End: Original strand, 36926447 - 36926568
Alignment:
| Q |
422 |
cgactcatgcctgaaataggaactcaagaatacaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacagtttcaagctgttc |
521 |
Q |
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|||||||||||||||| |||||||||||| ||||| |||||| ||||||||||| |||| |||||| | |||||||| |||||||||||||||||||||| |
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| T |
36926447 |
cgactcatgcctgaaaaaggaactcaagagtacaatgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttc |
36926546 |
T |
|
| Q |
522 |
ttggcctttcaattgtgaaaat |
543 |
Q |
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|||| |||||| ||||| |||| |
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| T |
36926547 |
ttggtctttcacttgtggaaat |
36926568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 423 - 547
Target Start/End: Complemental strand, 49608358 - 49608234
Alignment:
| Q |
423 |
gactcatgcctgaaataggaactcaagaatacaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacagtttcaagctgttct |
522 |
Q |
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||||||||||||||| | | |||||||||||||| ||||||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||| |
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| T |
49608358 |
gactcatgcctgaaaaaaggactcaagaatacaatcaacttgtggaaaatcctgacaagccttttttgaagacaattacttcacagtttcaagctgttct |
49608259 |
T |
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| Q |
523 |
tggcctttcaattgtgaaaatcttg |
547 |
Q |
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|| | ||||| || ||||||||||| |
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| T |
49608258 |
tgacatttcacttttgaaaatcttg |
49608234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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