View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7607_low_100 (Length: 228)

Name: NF7607_low_100
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7607_low_100
NF7607_low_100
[»] chr1 (6 HSPs)
chr1 (1-228)||(27452745-27452973)
chr1 (167-219)||(50667787-50667839)
chr1 (108-180)||(20949703-20949775)
chr1 (184-217)||(25603498-25603531)
chr1 (184-217)||(25860489-25860522)
chr1 (184-217)||(25884330-25884363)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 27452745 - 27452973
Alignment:
Q  1 tcatcattaaattaaaaaattgttaatttttgtggtttttattatatttgttcttt-catataggttgttggatttttagttaattcataattctcttgt 99  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  27452745 tcattattaaattaaaaaattgttagtttttctggtttttattatatttgttcttttcatataggttgttggatttttagttaattcataattctcttgc 27452844  T
Q  100 acttcctaaatatgttctatgaattagggattattaggtagggtttaaacctttgaatttgattgtgttttgatataattctcttgccttcgatgaataa 199  Q
    ||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  27452845 acttcctcaatatgttctgtgaattagggcttattaggtagggtttaaacctttgaatttgattgttttttgatataattctgttgccttcgatgaataa 27452944  T
Q  200 acagaagttgctaagatgaaaatcattcc 228  Q
    |||||||||||||||||||||||||||||    
T  27452945 acagaagttgctaagatgaaaatcattcc 27452973  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 50667787 - 50667839
Alignment:
Q  167 ttttgatataattctcttgccttcgatgaataaacagaagttgctaagatgaa 219  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||| |||||||    
T  50667787 ttttgatataattttcttgcctttgatgaataaacagaagttgctgagatgaa 50667839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 20949703 - 20949775
Alignment:
Q  108 aatatgttctatgaattagggattattaggtagggtttaaacctttgaatttgattgtgttttgatataattc 180  Q
    |||||||| | |||||| ||| ||||||||||| |||||||| ||||||||||  ||||||||||| ||||||    
T  20949703 aatatgttatgtgaattcgggcttattaggtagtgtttaaacttttgaatttggctgtgttttgatgtaattc 20949775  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 25603498 - 25603531
Alignment:
Q  184 tgccttcgatgaataaacagaagttgctaagatg 217  Q
    |||||| |||||||||||||||||||||||||||    
T  25603498 tgcctttgatgaataaacagaagttgctaagatg 25603531  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 25860489 - 25860522
Alignment:
Q  184 tgccttcgatgaataaacagaagttgctaagatg 217  Q
    |||||| |||||||||||||||||||||||||||    
T  25860489 tgcctttgatgaataaacagaagttgctaagatg 25860522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 25884330 - 25884363
Alignment:
Q  184 tgccttcgatgaataaacagaagttgctaagatg 217  Q
    |||||| |||||||||||||||||||||||||||    
T  25884330 tgcctttgatgaataaacagaagttgctaagatg 25884363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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