View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7607_low_105 (Length: 213)

Name: NF7607_low_105
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7607_low_105
NF7607_low_105
[»] chr6 (2 HSPs)
chr6 (17-194)||(8890770-8890945)
chr6 (17-56)||(18700143-18700182)
[»] chr5 (1 HSPs)
chr5 (14-194)||(40883573-40883751)
[»] chr7 (1 HSPs)
chr7 (29-174)||(10208793-10208933)
[»] chr1 (1 HSPs)
chr1 (17-174)||(33358513-33358663)
[»] chr3 (1 HSPs)
chr3 (21-117)||(48117990-48118083)


Alignment Details
Target: chr6 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 8890945 - 8890770
Alignment:
Q  17 atcacaacaattacaaacaaattcaacactaaagaagaagtagaaagtatatttgattattgaaaaatatttatatagataattaggacaacaaataaca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8890945 atcacaacaattacaaacaaattcaacactaaagaagaagtagaaagtatatttgattattgaaaaatatttatatagataattaggacaacaaataaca 8890846  T
Q  117 caaaagaagnnnnnnnnnggaagaaataaaccgaagaaagtatccatagtgccgtcacggcagcattcagttcccact 194  Q
    |||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8890845 caaaagaag--aaaaaaaggaagaaataaaccgaagaaagtatccatagtgccgtcacggcagcattcagttcccact 8890770  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 18700143 - 18700182
Alignment:
Q  17 atcacaacaattacaaacaaattcaacactaaagaagaag 56  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  18700143 atcacaacaattacaaacaacatcaacactaaagaagaag 18700182  T

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Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 40883573 - 40883751
Alignment:
Q  14 aaaatcacaacaattacaaacaaattcaacactaaagaagaagtagaaagtatatttgattattgaaaaatatttatatagataattaggacaacaaata 113  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40883573 aaaatcacaacaattacaaataaattcaacactaaagaagaagtagaaagtatatttgattattgaaaaatatttatatagataattaggacaacaaata 40883672  T
Q  114 acacaaaagaagnnnnnnnnnggaagaaataaaccgaagaaagtatccatagtgccgtcacggcagcattcagttcccact 194  Q
    ||||| ||||||         ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40883673 acacagaagaag--aaaaaaaggaagaaataaaccgaagaaagtatccatagtgtcgtcacggcagcattcagttcccact 40883751  T

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Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 29 - 174
Target Start/End: Original strand, 10208793 - 10208933
Alignment:
Q  29 acaaacaaattcaacactaaagaagaagtagaaagtatatttgattattgaaaaatatttatatagataattaggacaacaaataacacaaaagaagnnn 128  Q
    ||||||||  ||||||||||||| ||||   |||||||||||||||||||||||| |||| ||||  ||||||||||||||||||||||||||||||       
T  10208793 acaaacaacatcaacactaaagaggaag---aaagtatatttgattattgaaaaacatttttatacctaattaggacaacaaataacacaaaagaag--a 10208887  T
Q  129 nnnnnnggaagaaataaaccgaagaaagtatccatagtgccgtcac 174  Q
          ||||||||||||||| |||||||||||||||  |||||||    
T  10208888 aataaaggaagaaataaaccgtagaaagtatccatagcaccgtcac 10208933  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 33358513 - 33358663
Alignment:
Q  17 atcacaacaattacaaacaaattcaacactaaagaagaagtagaaagtatatttgattattgaaaaatatttatatagataattaggacaacaaataaca 116  Q
    ||||||||||||||||||||  ||| ||||||||||||||   |||||||||||||||||| ||||  |||| ||||  |||||||||||||||||||||    
T  33358513 atcacaacaattacaaacaacatcatcactaaagaagaag---aaagtatatttgattatttaaaac-atttttatacctaattaggacaacaaataaca 33358608  T
Q  117 caaaagaagnnnnnnnnnggaagaaataaaccgaagaaagtatccatagtgccgtcac 174  Q
    |||||||||         ||||||||||||| | |||||||||||||||  |||||||    
T  33358609 caaaagaag---aaaaaaggaagaaataaactgtagaaagtatccatagcaccgtcac 33358663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 48118083 - 48117990
Alignment:
Q  21 caacaattacaaacaaattcaacactaaagaagaagtagaaagtatatttgattattgaaaaatatttatatagataattaggacaacaaataacac 117  Q
    ||||||||||||||||  ||||||||||||||||||   ||||||||||||||||||||| || |||| ||||  ||||||||||||||||| ||||    
T  48118083 caacaattacaaacaacatcaacactaaagaagaag---aaagtatatttgattattgaagaacatttttatacctaattaggacaacaaatcacac 48117990  T

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