View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_low_11 (Length: 539)
Name: NF7607_low_11
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Complemental strand, 33442619 - 33442080
Alignment:
| Q |
1 |
atagacaagtattcttagcagttaactcacctatctttttatttgcttctgtaagtttctcttctaattctttctgaatcttctcatgctcttttgatat |
100 |
Q |
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| T |
33442619 |
atagacaagtattcttagcagttaactcatctatctttttatttgcttctgtaagtttctcttctaattctttctgaatcttctcatgctcttttgatat |
33442520 |
T |
|
| Q |
101 |
atttggaatgacgacacacggtgtttgctcttgttcttcttcaacacaacttaaagtctgcaaaggttcctgcagtgtttcatctgaaggagcaacaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33442519 |
atttggaatgacgacacacggtgtttgctcttgttcttcttcaacacaacttaaaggctgcaaaggttcctgcagtgtttcatctgaaggagcaacaatt |
33442420 |
T |
|
| Q |
201 |
tcagcatgcacttttttgtctaaatcttcgtcagattttactccaacaggagaatcaatgaggacttttgccaacttttcgtttaggcttctcgatgatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33442419 |
tcagcatgcacttttttgtctaaatcttcgtcagattttactccaacaggagaatcaacgaggacttttgccaacttttcgtttagacttctcgatgatc |
33442320 |
T |
|
| Q |
301 |
tttttgatccactttccttatctgttgaaagatcgtgtgcctgataaatgtagtattgttagtgtattaatcaaatcaaacat----------------- |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33442319 |
tttttgatccactttccttatctgttgaaagatcgtgtgcctgataaatgtagtattgttagtgtattaatcaaatcaaacatttctctaatgaattcag |
33442220 |
T |
|
| Q |
384 |
ttctaaaaagagaattataattgattaacagattgtcaaaacttaaccaagaataatggctcaataagtttctggtttccacaaaacaagagtaataaga |
483 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33442219 |
ttctaaaaagagaattataattgattaacagattgtcaaaacttaaccaagaataatggctcaataagtttctggtttccataaaacaagagtaataaga |
33442120 |
T |
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| Q |
484 |
aaatgtgtaatttaaaaatgtgtgaaataaagcactaagt |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33442119 |
aaatgtgtaatttaaaaatgtgtgaaataaagcactaagt |
33442080 |
T |
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