View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7607_low_12 (Length: 532)

Name: NF7607_low_12
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7607_low_12
NF7607_low_12
[»] chr4 (2 HSPs)
chr4 (35-515)||(40342577-40343069)
chr4 (350-400)||(24323457-24323507)
[»] chr8 (1 HSPs)
chr8 (269-411)||(5699669-5699810)
[»] chr6 (1 HSPs)
chr6 (340-411)||(2091038-2091109)
[»] chr7 (3 HSPs)
chr7 (296-391)||(38658050-38658145)
chr7 (298-400)||(28574758-28574860)
chr7 (298-400)||(5472127-5472230)
[»] chr1 (3 HSPs)
chr1 (298-400)||(38833048-38833150)
chr1 (350-400)||(29752291-29752341)
chr1 (351-387)||(11784323-11784359)
[»] chr2 (3 HSPs)
chr2 (298-395)||(16237589-16237686)
chr2 (352-400)||(11168963-11169011)
chr2 (298-400)||(32407744-32407846)
[»] chr5 (1 HSPs)
chr5 (350-400)||(39180915-39180965)
[»] chr3 (3 HSPs)
chr3 (350-400)||(11691960-11692010)
chr3 (298-400)||(20632950-20633052)
chr3 (350-400)||(48823033-48823083)


Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 35 - 515
Target Start/End: Complemental strand, 40343069 - 40342577
Alignment:
Q  35 tcatctaagtaactagtgattttttggtgcccgtaatgtaaaccaagtctcagatagcgattgacatgttatgcatctccctatagtgtcaaattgaaat 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40343069 tcatctaagtaactagtgattttttggtgcccgtaatgtaaaccaagtctcagatagcgattgacatgttatgcatctccctatagtgtcaaattgaaat 40342970  T
Q  135 caaatggtgtcattgctgaagggcatatttatataatggaaatgctagatagtacagtaacaattaatgtatgtttagattgatacttactattgagtat 234  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40342969 caaatggtgtcattgctgaaggacatatttatataatggaaatgctagatagtacagtaacaattagtgtatgtttagattgatacttactattgagtat 40342870  T
Q  235 gacaaaatca---tgtagcttaccggcca-nnnnnnnnattgatgggagggccgaaacc-taaaagagagaaattacattttaatcaaacgcaaaaaaga 329  Q
    ||||||||||   ||||||||||||||||         ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  40342869 gacaaaatcatggtgtagcttaccggccatttttttttattgacgggagggccgaaaccttaaaagagagaaattacatcttaatcaaacgcaaaaaaga 40342770  T
Q  330 aatctcttcttaatcaacatctaacaaatgactaatttgagtcggataagactcataaaacatcatttcatgacccattctaatttaatgttactactat 429  Q
    |||| ||||||||||| ||  |||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||| |||||||||||||    
T  40342769 aatcccttcttaatcagcagttaacaaatgactaatttgagtcggataagagtcataaaacatcgttccatgacccattctaatttcatgttactactat 40342670  T
Q  430 taatttaatttcatactactattatgatattccaattcaagggta-gaagtagtg------caatatgtactctggtcagaacaagtagtaat 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||      ||||||||||||||||||||||||||||||||    
T  40342669 taatttaatttcatactactattatgatattccaattcaagggtatgaagtagtgcaatatcaatatgtactctggtcagaacaagtagtaat 40342577  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 400
Target Start/End: Original strand, 24323457 - 24323507
Alignment:
Q  350 ctaacaaatgactaatttgagtcggataagactcataaaacatcatttcat 400  Q
    ||||||||||  |||||||||||||| | ||||||||||||||||| ||||    
T  24323457 ctaacaaatggttaatttgagtcggacacgactcataaaacatcatctcat 24323507  T

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Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 269 - 411
Target Start/End: Complemental strand, 5699810 - 5699669
Alignment:
Q  269 attgatgggagggccgaaacctaaaagagagaaattacattttaatcaaacgcaaaaaagaaatctcttcttaatcaacatctaacaaatgactaatttg 368  Q
    ||||| |||||||||||| |  |||| ||||||||||||| |||||||||| || |||||||| | || ||| |||| || |||||||||||||||||||    
T  5699810 attgacgggagggccgaagctcaaaa-agagaaattacatcttaatcaaacacataaaagaaacccctgcttgatcagcagctaacaaatgactaatttg 5699712  T
Q  369 agtcggataagactcataaaacatcatttcatgacccattcta 411  Q
    ||||||| ||||||||||||| | |||||||||||||||||||    
T  5699711 agtcggacaagactcataaaataccatttcatgacccattcta 5699669  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 340 - 411
Target Start/End: Original strand, 2091038 - 2091109
Alignment:
Q  340 taatcaacatctaacaaatgactaatttgagtcggataagactcataaaacatcatttcatgacccattcta 411  Q
    ||||||||  ||||||||||| |||||||||||||| ||||||||||||||||||| ||||  |||||||||    
T  2091038 taatcaacgactaacaaatgattaatttgagtcggacaagactcataaaacatcatctcataccccattcta 2091109  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 391
Target Start/End: Original strand, 38658050 - 38658145
Alignment:
Q  296 agagaaattacattttaatcaaacgcaaaaaagaaatctcttcttaatcaacatctaacaaatgactaatttgagtcggataagactcataaaaca 391  Q
    ||||||||||||| ||||||||||||  ||||||||||  |  || |||| ||  ||||||||||||||||||||||||| || |||| |||||||    
T  38658050 agagaaattacatcttaatcaaacgcggaaaagaaatccatgtttgatcagcaattaacaaatgactaatttgagtcggacaaaactcgtaaaaca 38658145  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 400
Target Start/End: Original strand, 28574758 - 28574860
Alignment:
Q  298 agaaattacattttaatcaaacgcaaaaaagaaatctcttcttaatcaacatctaacaaatgactaatttgagtcggataagactcataaaacatcattt 397  Q
    ||||||||||| |||||||| |||  ||||| || | |  ||| |||| || ||||||||||  |||||||||||||| | ||||||||||||||||| |    
T  28574758 agaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacgactcataaaacatcatct 28574857  T
Q  398 cat 400  Q
    |||    
T  28574858 cat 28574860  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 400
Target Start/End: Complemental strand, 5472230 - 5472127
Alignment:
Q  298 agaaattacattttaatcaaacgcaaaaaag-aaatctcttcttaatcaacatctaacaaatgactaatttgagtcggataagactcataaaacatcatt 396  Q
    ||||||||||| |||||||| |||  ||||| |||||||  ||| ||||||| ||||||||||  |||||||||| ||  | ||||||||| |||||||     
T  5472230 agaaattacatcttaatcaagcgcggaaaagtaaatctccgcttgatcaacaactaacaaatggttaatttgagttgggcacgactcataatacatcatc 5472131  T
Q  397 tcat 400  Q
    ||||    
T  5472130 tcat 5472127  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 400
Target Start/End: Original strand, 38833048 - 38833150
Alignment:
Q  298 agaaattacattttaatcaaacgcaaaaaagaaatctcttcttaatcaacatctaacaaatgactaatttgagtcggataagactcataaaacatcattt 397  Q
    ||||||||||| |||||||| |||  ||||| || | |  ||| |||| || ||||||||||  |||||||||||||| | ||||||||||||||||| |    
T  38833048 agaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacgactcataaaacatcatct 38833147  T
Q  398 cat 400  Q
    |||    
T  38833148 cat 38833150  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 400
Target Start/End: Original strand, 29752291 - 29752341
Alignment:
Q  350 ctaacaaatgactaatttgagtcggataagactcataaaacatcatttcat 400  Q
    ||||||||||  |||||||||||||| | ||||||||||||||||| ||||    
T  29752291 ctaacaaatggttaatttgagtcggacacgactcataaaacatcatctcat 29752341  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 387
Target Start/End: Complemental strand, 11784359 - 11784323
Alignment:
Q  351 taacaaatgactaatttgagtcggataagactcataa 387  Q
    ||||||||||||||||||||||||| | |||||||||    
T  11784359 taacaaatgactaatttgagtcggacatgactcataa 11784323  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 298 - 395
Target Start/End: Complemental strand, 16237686 - 16237589
Alignment:
Q  298 agaaattacattttaatcaaacgcaaaaaagaaatctcttcttaatcaacatctaacaaatgactaatttgagtcggataagactcataaaacatcat 395  Q
    ||||||||||| |||||||| |||  ||||| || | |  ||| |||| || ||||||||||  |||||||||||||| | |||||||||||||||||    
T  16237686 agaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacgactcataaaacatcat 16237589  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 11169011 - 11168963
Alignment:
Q  352 aacaaatgactaatttgagtcggataagactcataaaacatcatttcat 400  Q
    ||||||||||||||||| |||||| |||| |||||||||||||| ||||    
T  11169011 aacaaatgactaatttgtgtcggacaagattcataaaacatcatctcat 11168963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 400
Target Start/End: Complemental strand, 32407846 - 32407744
Alignment:
Q  298 agaaattacattttaatcaaacgcaaaaaagaaatctcttcttaatcaacatctaacaaatgactaatttgagtcggataagactcataaaacatcattt 397  Q
    ||||||||||| ||||||||||||  ||||| || | |  ||| |||| || ||||||||||  |||||||||||||| |  ||| |||||||||||| |    
T  32407846 agaaattacatcttaatcaaacgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacaacttataaaacatcatct 32407747  T
Q  398 cat 400  Q
    |||    
T  32407746 cat 32407744  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 400
Target Start/End: Complemental strand, 39180965 - 39180915
Alignment:
Q  350 ctaacaaatgactaatttgagtcggataagactcataaaacatcatttcat 400  Q
    ||||||||||  |||||||||||||| | ||||||||||||||||| ||||    
T  39180965 ctaacaaatggttaatttgagtcggacatgactcataaaacatcatctcat 39180915  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 400
Target Start/End: Original strand, 11691960 - 11692010
Alignment:
Q  350 ctaacaaatgactaatttgagtcggataagactcataaaacatcatttcat 400  Q
    ||||||||||  |||||||||||||| | ||||||||||||||||| ||||    
T  11691960 ctaacaaatggttaatttgagtcggacacgactcataaaacatcatctcat 11692010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 400
Target Start/End: Original strand, 20632950 - 20633052
Alignment:
Q  298 agaaattacattttaatcaaacgcaaaaaagaaatctcttcttaatcaacatctaacaaatgactaatttgagtcggataagactcataaaacatcattt 397  Q
    ||||||||||| |||||||| |||  ||||| || | |  ||| |||| || ||||||||||  |||||||||||||  | ||||||||||||||||| |    
T  20632950 agaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggtcacgactcataaaacatcatct 20633049  T
Q  398 cat 400  Q
    |||    
T  20633050 cat 20633052  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 400
Target Start/End: Original strand, 48823033 - 48823083
Alignment:
Q  350 ctaacaaatgactaatttgagtcggataagactcataaaacatcatttcat 400  Q
    ||||||||||  |||||||||||||| | ||||||||||||||||| ||||    
T  48823033 ctaacaaatggttaatttgagtcggacacgactcataaaacatcatctcat 48823083  T

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