View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_low_14 (Length: 514)
Name: NF7607_low_14
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 12273339 - 12273635
Alignment:
| Q |
19 |
aaccttcacaatttcaagagggaggtctcttattaatggaagatgaaaaatcacttgctatggaacttgcagcttcttctatggctgagcttgttaagat |
118 |
Q |
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| T |
12273339 |
aaccttcacaatttcaagagggaggtctcttattaatggaagatgaaaaatcacttgctatggaacttgcagcttcttctatggctgagcttgttaagat |
12273438 |
T |
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| Q |
119 |
gtgtcaaatgaatgaaccgctttggattcgtagcgagaatgatagggaagttcttaattttgatgagcatgctagggtttttcaatggcctttgaatctt |
218 |
Q |
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| T |
12273439 |
gtgtcaaatgaatgaaccactttggattcgtagcgagaatgatagagaagttcttaattttgatgagcatgctagggtttttcaatggcctttgaatctt |
12273538 |
T |
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| Q |
219 |
aagcaaaggaatgagttaaggaatgaagctacgcgtgattctgctgttgtaatcatgaatagtgtcactcttgttgatgcttttcttgatgctgtaa |
315 |
Q |
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| T |
12273539 |
aagcaaaggaatgagttaaggaatgaagctacgcgtgattctgctgttgtaatcatgaatagtgttactcttgttgatgcttttcttgatgctgtaa |
12273635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 395 - 514
Target Start/End: Original strand, 12273714 - 12273833
Alignment:
| Q |
395 |
ctttctttaccttgtatgttttatagcaaaaatggatggaattgtttccaacaattgttgctagagcaagaactgttcaaattatagcttcaggtgcttc |
494 |
Q |
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| T |
12273714 |
ctttctttaccttgtatgttttatagcaaaaatggatggaattgtttccaacaattgttgctagagcaagaactgttcaaattatagcttcaggtgcttc |
12273813 |
T |
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| Q |
495 |
tggccatgcaagtgggactc |
514 |
Q |
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| T |
12273814 |
tggccatgcaagtgggactc |
12273833 |
T |
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