View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_low_15 (Length: 507)
Name: NF7607_low_15
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 43615925 - 43615595
Alignment:
| Q |
1 |
ttagattttcaactattgtttttcgaggtggtggctacgaaattttttcgtatctgattagatgcataagaacttgaatccccgtcgttagattttcatg |
100 |
Q |
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| T |
43615925 |
ttagattttcaactagagtttttcgaggttcaggctacgaaattttttcgtatctggttagatgcataagaacttgaatccccgtcgttagattttcatg |
43615826 |
T |
|
| Q |
101 |
ctacattaatgggaatgaaaattgaagctagttatttgttaaaattgaacgtgacagcttggttcaactcaaagctcggttacactgagttaaagtttca |
200 |
Q |
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| T |
43615825 |
ctacattaatgggaatgaaaattgaagctagttatttgttaaaattgaacgtgacagcttggttcaactcaaagctcggttacactgagttaaagtttca |
43615726 |
T |
|
| Q |
201 |
tatcatatgataatttaactatcgagcaagattgaacaccaggtattatgtcatagaaagcctgcaacccaagtctatataatatccattactctatttc |
300 |
Q |
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| T |
43615725 |
tatcatatgataattaaactatcgagcaagattgaacaccaggtattatgtcatagaaagcctgcaacccaagtctatataatatccattactctatttc |
43615626 |
T |
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| Q |
301 |
gtcattatcaaaatcataacacagactatca |
331 |
Q |
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| T |
43615625 |
gtcatcatcaaaatcataacacagactatca |
43615595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 394 - 489
Target Start/End: Complemental strand, 43615493 - 43615398
Alignment:
| Q |
394 |
ggaccctcctcaaaaaagatttatgaattaggaagattaaagtaattctctcttatgaaggttaatcttggtacacaatatgttagcattgggcct |
489 |
Q |
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| T |
43615493 |
ggaccctcctcaaaaaagatttatgaattaggaagattaaagtaattctctcttatgaaggttaatcttggtacacaatatgttagcattgggcct |
43615398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 436 - 481
Target Start/End: Complemental strand, 43647198 - 43647153
Alignment:
| Q |
436 |
taattctctcttatgaaggttaatcttggtacacaatatgttagca |
481 |
Q |
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| T |
43647198 |
taattctgtcttatgaagggtaatcttggtaaacaatatgttagca |
43647153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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