View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_low_16 (Length: 490)
Name: NF7607_low_16
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 50 - 423
Target Start/End: Complemental strand, 12146074 - 12145695
Alignment:
| Q |
50 |
ttttagggccaaaactaccacactcaaatgccatatagattcacgatgcgatcatatcttatctctttttacttagttcagacacataaatatggaggga |
149 |
Q |
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| T |
12146074 |
ttttagggccaaagctaccacactcaaatgccatatagattcacgatgtgatcgtatcttatctctttttacttagttcagacacataaatatggaggga |
12145975 |
T |
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| Q |
150 |
aatattttggaccgtttgataggagtctacaatctaatctacattagaaataatttataatttttattataaatttcttgttaaagtatctaactcgtct |
249 |
Q |
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| T |
12145974 |
aatattttggaccgtttgataggagtctacaatctaatctacattagaaataatttataatttttattataaatttcttgttaaagtatctaactcgtct |
12145875 |
T |
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| Q |
250 |
cgtatcatgaatttgataaacctcacgtattcatgcatccatattgtatcgccctcgtacaaggtatccgacttcgtatttagttgtcc---cnnnnnnn |
346 |
Q |
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| T |
12145874 |
cgtatcatgaatttgataaatctcatgtattcgtgtattcatattgtatcacactcgtacaacgtatccgactttgtatttagttgtccatttttttttt |
12145775 |
T |
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| Q |
347 |
nnnnnggaaattaggttttgtgttactttccgta---tattattgcacggatatattgaacgctatgttcgtaattgatt |
423 |
Q |
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| T |
12145774 |
ttgttggaaattaggttttgtgttactttccgtatattattattgcacggatatattgaacgctatgttcgtaattgatt |
12145695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 12145672 - 12145606
Alignment:
| Q |
408 |
atgttcgtaattgattgcttttttaggttaaaagaaaccacttacgacaaaacatttctgtttcttt |
474 |
Q |
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| T |
12145672 |
atgttcgtaattgattgcttttttaggttaaaagaaaccacttacgacaaaacatttcagtttcttt |
12145606 |
T |
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