View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7607_low_17 (Length: 490)

Name: NF7607_low_17
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7607_low_17
NF7607_low_17
[»] chr5 (5 HSPs)
chr5 (7-269)||(4383938-4384200)
chr5 (277-472)||(4383689-4383884)
chr5 (289-376)||(4768899-4768984)
chr5 (69-168)||(36849605-36849704)
chr5 (374-422)||(4385434-4385482)
[»] chr2 (5 HSPs)
chr2 (50-174)||(16230914-16231041)
chr2 (27-184)||(34688665-34688825)
chr2 (27-184)||(34711077-34711237)
chr2 (21-110)||(35546696-35546785)
chr2 (70-124)||(35564747-35564801)
[»] chr3 (2 HSPs)
chr3 (75-174)||(46520169-46520268)
chr3 (69-165)||(49879597-49879693)


Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 4384200 - 4383938
Alignment:
Q  7 tgtccaagaatattaaccgacacattgttgtttatctcattagctgtggcatttgaagactctgtttgcttctcttgatcatcttttggctcaacgaatt 106  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4384200 tgtccaaatatattaaccgacacattgttgtttatctcattagctgtggcatttgaagactctgtttgcttctcttgatcatcttttggctcaacgaatt 4384101  T
Q  107 cctttttagcatctatccccttctggttgaacccaattctatcttgtatgtcgtcttcatcatcatcaatactaataagtttcatcttgagagtaggcat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  4384100 cctttttagcatctatccccttctggttgaacccaattctatcttgtatgtcgtcttcatcatcatcaatactaataagttccttcttgagagtaggcat 4384001  T
Q  207 tcattctgttgattgccactgagtttctgttgtctatcatagtcataccaaagattacggagt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  4384000 tcattctgttgattgccactgagtttctgttgtctatcatagtcatagcaaacattacggagt 4383938  T

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Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 277 - 472
Target Start/End: Complemental strand, 4383884 - 4383689
Alignment:
Q  277 catctttgacagcagagaagctgcattgtagtgtttcgattatatgcaattcttagtgttatagggtataatgttgtggttaaatactacaattccattg 376  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4383884 catctttgacagcagagaagctgcattgtagtttttcgattatatgcaattcttagtgttatagggtataatgttgtggttaaatactacaattccattg 4383785  T
Q  377 caagattaccttcctgtgctcgttgcacttttagctctactcgctttgctatgcttgatcgactatcagtgaatacaagtcgtacaccgcaggtca 472  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4383784 caagattaccttcctgtgctcgttgcacttttagctctactcgctttgctatgcttgatcgactatcagtgaatacaagtcgtaaaccgcaggtca 4383689  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 289 - 376
Target Start/End: Complemental strand, 4768984 - 4768899
Alignment:
Q  289 cagagaagctgcattgtagtgtttcgattatatgcaattcttagtgttatagggtataatgttgtggttaaatactacaattccattg 376  Q
    ||||||||||||||||| || ||||||||||  ||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||    
T  4768984 cagagaagctgcattgttgtttttcgattat--gcaattcttagtgttatagggtacaatgctgtggttaaatactacaattcgattg 4768899  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 36849605 - 36849704
Alignment:
Q  69 tgtttgcttctcttgatcatcttttggctcaacgaattcctttttagcatctatccccttctggttgaacccaattctatcttgtatgtcgtcttcatca 168  Q
    ||||||||||||||| ||| |||||||||||  || |||||||| ||||||| |||||| ||||||||| |||||||  |||||| |||| ||| |||||    
T  36849605 tgtttgcttctcttgttcagcttttggctcactgacttccttttgagcatctgtcccctcctggttgaatccaattccttcttgtttgtcctctacatca 36849704  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 374 - 422
Target Start/End: Complemental strand, 4385482 - 4385434
Alignment:
Q  374 ttgcaagattaccttcctgtgctcgttgcacttttagctctactcgctt 422  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  4385482 ttgcaagattaccttcatgtgctcgttgcacttttagctctgctcgctt 4385434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 16231041 - 16230914
Alignment:
Q  50 ctgtggcatttgaagactctgtttgcttctcttgatcatcttttggctcaacgaattcctttttagcatctatcc---ccttctggttgaacccaattct 146  Q
    |||||| |||||| || ||  |||||||||||||||| ||||||||||||||||||||||||||||||| |||||   ||| ||||||||||||| ||||    
T  16231041 ctgtggtatttgaggattcgatttgcttctcttgatcgtcttttggctcaacgaattcctttttagcatttatcccctcctgctggttgaacccagttct 16230942  T
Q  147 atcttgtatgtcgtcttcatcatcatca 174  Q
      || |||||||  ||||||||||||||    
T  16230941 gcctcgtatgtcaacttcatcatcatca 16230914  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 34688825 - 34688665
Alignment:
Q  27 cacattgttgtttatctcattagctgtggcatttgaagactctgtttgcttctcttgatcatcttttggctcaacgaattcctttttagcatctatcccc 126  Q
    |||||| ||||| |||||| ||  ||||| |||||| |||||  ||||||||||||||||||||||||||||||| | ||||| |||||||| |||||||    
T  34688825 cacattattgttcatctcactaattgtggtatttgaggactcgatttgcttctcttgatcatcttttggctcaacaagttcctgtttagcatttatcccc 34688726  T
Q  127 ttc---tggttgaacccaattctatcttgtatgtcgtcttcatcatcatcaatactaataa 184  Q
    | |   |||||||| ||| ||||  || |||||||   |||||||||||||||| ||||||    
T  34688725 tcctgttggttgaatccagttctgcctcgtatgtcaatttcatcatcatcaataataataa 34688665  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 34711237 - 34711077
Alignment:
Q  27 cacattgttgtttatctcattagctgtggcatttgaagactctgtttgcttctcttgatcatcttttggctcaacgaattcctttttagcatctatcccc 126  Q
    |||||| ||||| |||||| ||  ||||| |||||| |||||  ||||||||||||||||||||||||||||||| | ||||| |||||||| |||||||    
T  34711237 cacattattgttcatctcactaattgtggtatttgaggactcgatttgcttctcttgatcatcttttggctcaacaagttcctgtttagcatttatcccc 34711138  T
Q  127 ttc---tggttgaacccaattctatcttgtatgtcgtcttcatcatcatcaatactaataa 184  Q
    | |   |||||||| ||| ||||  || |||||||   |||||||||||||||| ||||||    
T  34711137 tcctgttggttgaatccagttctgcctcgtatgtcaatttcatcatcatcaataataataa 34711077  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 35546696 - 35546785
Alignment:
Q  21 aaccgacacattgttgtttatctcattagctgtggcatttgaagactctgtttgcttctcttgatcatcttttggctcaacgaattcctt 110  Q
    ||||| ||||||||||||||||||||||  ||| | |||| | |||||  ||| |||||||||||||||||| |||||||| ||||||||    
T  35546696 aaccgccacattgttgtttatctcattaattgtcgtatttaaggactcgattttcttctcttgatcatctttgggctcaacaaattcctt 35546785  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 35564747 - 35564801
Alignment:
Q  70 gtttgcttctcttgatcatcttttggctcaacgaattcctttttagcatctatcc 124  Q
    |||| ||||||||||||||||||||||||||| |||| ||| ||||||| |||||    
T  35564747 gttttcttctcttgatcatcttttggctcaacaaattgcttcttagcatttatcc 35564801  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 46520268 - 46520169
Alignment:
Q  75 cttctcttgatcatcttttggctcaacgaattcctttttagcatctatccccttctggttgaacccaattctatcttgtatgtcgtcttcatcatcatca 174  Q
    ||||||||||||| ||||||| |||   | || || |||||| ||| ||||||  |||||||| ||||||||  |||||||||| |||||||||||||||    
T  46520268 cttctcttgatcaacttttggttcactcactttctctttagcgtctgtcccctcgtggttgaatccaattcttccttgtatgtcctcttcatcatcatca 46520169  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 49879693 - 49879597
Alignment:
Q  69 tgtttgcttctcttgatcatcttttggctcaacgaattcctttttagcatctatccccttctggttgaacccaattctatcttgtatgtcgtcttca 165  Q
    |||||||||||||||||||||||||| ||||| || ||| |||||| | | |||||| | |||| |||| ||| ||||  |||| ||||| ||||||    
T  49879693 tgtttgcttctcttgatcatcttttgactcaatgatttcttttttatcgtttatcccatcctggatgaatccagttctgccttgaatgtcctcttca 49879597  T

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