View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_low_2 (Length: 672)
Name: NF7607_low_2
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 11492881 - 11492408
Alignment:
| Q |
1 |
ttgatacttgatgttgtatagaattacagttaaacctgactgattttctcaattttgaaaaattacagtcactaagacctnnnnnnnccatgattttgct |
100 |
Q |
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| T |
11492881 |
ttgatacttgatgttgtatagaatcacaatcaaacctgactgattgtctcaattgtgaaaaattacggtcacaaagacctaaaaaaaccatgattttgct |
11492782 |
T |
|
| Q |
101 |
ggaggtcatataccnnnnnnnn---ctttcaaaagctagctttaaatatttttcattattttatggtgaaagagaacaaaacactgttagttttagattt |
197 |
Q |
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| T |
11492781 |
agaggtcatatacctatttttttttctttcaaaagctagctttaaatatttttcattattttatggtgaaagagaacaaaacactgttagttttagattt |
11492682 |
T |
|
| Q |
198 |
gttacagaattgatcaggtgtttgttttattttatgatgatatatatttggagtttccaattgcacatgaaaaatcatgtgttcagtgctaattgttgtt |
297 |
Q |
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| T |
11492681 |
gttacagaattgatcaggtgtttgttttattttatgatgatatatatttggagtttccaattgcacatgaaaaatcatgtgttcagtgctaattgttgtt |
11492582 |
T |
|
| Q |
298 |
tttggttggatttgtatagcatttattgaacaatagtactaattttaaaacaatatatatagatctaagaaaaatattaaatgctaaagccgcctctatt |
397 |
Q |
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| T |
11492581 |
tttggttggatttgtatagcatttattgaacaatagtactaattttaaaacaatatatatagatctaagaaaaatattgaatgctaaagccgcctctatt |
11492482 |
T |
|
| Q |
398 |
ttatgaaaattagtaccaagttgatattagtatgttatattagcttccaataacaaaatacttgagcacttgat |
471 |
Q |
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| T |
11492481 |
ttatgaaaattagtaccaagttgatattagtatgttatattagcttccaataacaaaatacttgagcacttgat |
11492408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 473 - 598
Target Start/End: Complemental strand, 11492381 - 11492261
Alignment:
| Q |
473 |
atttgagaatcagaaaatattttgagcatttgatcatttcacatttatatcaaaagtaataaatagtaaataatatgaaaagaaacgttaatgttcaaat |
572 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11492381 |
atttgagaatcagaaaatattttgagcacttgatcatttcacatttatatcaaaagtaataaatagtaaataatatgaaaa-----gttaatgttcaaat |
11492287 |
T |
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| Q |
573 |
gatatcgtaaattgtaaaatgacata |
598 |
Q |
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| T |
11492286 |
gatatcgtaaattgtaaaatgacata |
11492261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 624 - 666
Target Start/End: Complemental strand, 11492269 - 11492227
Alignment:
| Q |
624 |
aatgacatatattgtgaaacaaaggtgtgcatatattcttcga |
666 |
Q |
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| T |
11492269 |
aatgacatatattgtgaaacagaggtgtgcatatattgttcga |
11492227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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