View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7607_low_22 (Length: 467)

Name: NF7607_low_22
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7607_low_22
NF7607_low_22
[»] chr2 (3 HSPs)
chr2 (9-292)||(35503878-35504160)
chr2 (316-449)||(35504171-35504304)
chr2 (165-206)||(6468727-6468768)
[»] chr3 (4 HSPs)
chr3 (164-241)||(31752736-31752813)
chr3 (167-242)||(15985232-15985307)
chr3 (164-238)||(44344772-44344846)
chr3 (163-238)||(47077644-47077719)
[»] chr5 (4 HSPs)
chr5 (167-242)||(41174350-41174425)
chr5 (167-242)||(844794-844869)
chr5 (170-199)||(28808157-28808186)
chr5 (166-238)||(10319953-10320025)
[»] chr1 (5 HSPs)
chr1 (147-242)||(44529227-44529321)
chr1 (162-202)||(46299439-46299479)
chr1 (163-242)||(49806015-49806094)
chr1 (172-242)||(27262790-27262860)
chr1 (167-241)||(31963039-31963113)
[»] chr7 (2 HSPs)
chr7 (162-242)||(41072425-41072505)
chr7 (140-210)||(1799504-1799574)
[»] chr4 (3 HSPs)
chr4 (163-238)||(27915204-27915279)
chr4 (168-238)||(11123453-11123523)
chr4 (165-239)||(26009729-26009803)
[»] chr8 (2 HSPs)
chr8 (163-242)||(7859167-7859246)
chr8 (160-202)||(41657677-41657719)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 9 - 292
Target Start/End: Original strand, 35503878 - 35504160
Alignment:
Q  9 gaagaatattagaacaaatatgttataactttggttcaaaccggaaaaattgaaatgattttattgtannnnnnnnnatttcactcactacattatttta 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         | ||| |||||||||||||||||    
T  35503878 gaagaaaattagaacaaatatgttataactttggttcaaaccggaaaaattgaaatgattttattgtatttctttttaattcgctcactacattatttta 35503977  T
Q  109 cattgaacgatcatatgatatacnnnnnnnagaaaaacgctaacaactgtcttaaggacacttgataagaaatttaaagtgaaaattttattttagaagt 208  Q
    |||||||||||| ||||||||||       | |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  35503978 cattgaacgatcttatgatatacttttttaaaaaaaacgctaacaactgtcttaagaacacttaataagaaatttaaagtgaaaattttatttta-aagt 35504076  T
Q  209 tgcgcatttaacacattaaaatattaaaaagtaaannnnnnnnaacataaaatttatcaattgtaagatcacttgttagcaaga 292  Q
    |||||||| ||||||||||||||||||||||||||        ||||||||||||||||||||||||   ||||||||||||||    
T  35504077 tgcgcattcaacacattaaaatattaaaaagtaaatattttttaacataaaatttatcaattgtaagggtacttgttagcaaga 35504160  T

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Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 316 - 449
Target Start/End: Original strand, 35504171 - 35504304
Alignment:
Q  316 attatgaaacaaattgtcttctgttactttacaagccaaattagacaaatgatttgatcaactttcagaagtcccatcgttatgaaatgatatattaaca 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35504171 attatgaaacaaattgtcttctgttactttacaagccaaattagacaaatgatttgatcaactttcagaagtcccatcgttatgaaatgatatattaaca 35504270  T
Q  416 ttggtttaacaataatggattattatgacagatc 449  Q
    |||||||| |||||||||||||||||||||||||    
T  35504271 ttggtttagcaataatggattattatgacagatc 35504304  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 6468727 - 6468768
Alignment:
Q  165 gacacttgataagaaatttaaagtgaaaattttattttagaa 206  Q
    |||||||| || ||| ||||||||||||||||||||||||||    
T  6468727 gacacttgttatgaagtttaaagtgaaaattttattttagaa 6468768  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 31752813 - 31752736
Alignment:
Q  164 ggacacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagta 241  Q
    ||||||||||||||||||||||||| |||  |||||||| ||||||| | ||| ||||||||||||||||||||||||    
T  31752813 ggacacttgataagaaatttaaagtaaaaggtttattttggaagttgtgtattcaacacattaaaatattaaaaagta 31752736  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 15985232 - 15985307
Alignment:
Q  167 cacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagtaa 242  Q
    ||||||||||||| ||||||||||||  ||||| |  ||||||| ||||| |||||||| ||||||||||||||||    
T  15985232 cacttgataagaagtttaaagtgaaaggtttatatgggaagttgagcattcaacacattgaaatattaaaaagtaa 15985307  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 44344846 - 44344772
Alignment:
Q  164 ggacacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaa 238  Q
    |||||||||||||||| |||||||| |||  |||||||  ||||||| | ||| |||| ||||||||||||||||    
T  44344846 ggacacttgataagaagtttaaagttaaacatttatttcggaagttgtgtattcaacatattaaaatattaaaaa 44344772  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 47077644 - 47077719
Alignment:
Q  163 aggacacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaa 238  Q
    |||||| || |||| || |||||||| ||||||||||||| ||| ||| | |||||||| |||||||||| |||||    
T  47077644 aggacattttataaaaagtttaaagtaaaaattttatttttgaatttgtgtatttaacatattaaaatataaaaaa 47077719  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 41174425 - 41174350
Alignment:
Q  167 cacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagtaa 242  Q
    |||||||||||||  |||||||| || |||||| || ||||||| |||||||||||||| ||||||||||||||||    
T  41174425 cacttgataagaagcttaaagtggaagttttatcttggaagttgtgcatttaacacattgaaatattaaaaagtaa 41174350  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 844869 - 844794
Alignment:
Q  167 cacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagtaa 242  Q
    ||||||||||||| |||||||||  |||| |||||| ||||||| | ||| |||||||| ||| ||||||||||||    
T  844869 cacttgataagaagtttaaagtggtaattctattttggaagttgtgtattcaacacattgaaacattaaaaagtaa 844794  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 199
Target Start/End: Original strand, 28808157 - 28808186
Alignment:
Q  170 ttgataagaaatttaaagtgaaaattttat 199  Q
    ||||||||||||||||||||||||||||||    
T  28808157 ttgataagaaatttaaagtgaaaattttat 28808186  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 10319953 - 10320025
Alignment:
Q  166 acacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaa 238  Q
    ||||||| |||||||||||||  |||| |||||| ||| |||||| | ||| ||||||||||||  |||||||    
T  10319953 acacttgttaagaaatttaaaaagaaatttttatcttaaaagttgtgtattaaacacattaaaactttaaaaa 10320025  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 44529227 - 44529321
Alignment:
Q  147 gctaacaactgtcttaaggacacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagtaa 242  Q
    |||||||| ||||||| ||||| |||||||||| ||||||||| || |||||| ||| |||||| | ||| |||| ||||||| ||||||||||||    
T  44529227 gctaacaagtgtctta-ggacatttgataagaagtttaaagtggaagttttatcttaaaagttgtgtattcaacatattaaaacattaaaaagtaa 44529321  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 46299439 - 46299479
Alignment:
Q  162 aaggacacttgataagaaatttaaagtgaaaattttatttt 202  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  46299439 aaggacacttgataagaaatttaaagttaaaaatttatttt 46299479  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 49806094 - 49806015
Alignment:
Q  163 aggacacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagtaa 242  Q
    ||||||||||||||||  |||||| | |||||||| | ||  || ||| ||||| ||||||||||||||| |||||||||    
T  49806094 aggacacttgataagaggtttaaaataaaaattttgtcttgaaatttgtgcattcaacacattaaaatataaaaaagtaa 49806015  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 27262860 - 27262790
Alignment:
Q  172 gataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagtaa 242  Q
    |||||||| |||||| || ||||||| | |||||| ||| | ||| |||||||||||| ||||||||||||    
T  27262860 gataagaagtttaaaatggaaattttgtcttagaatttgtgtattcaacacattaaaacattaaaaagtaa 27262790  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 31963113 - 31963039
Alignment:
Q  167 cacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagta 241  Q
    ||||||||||||| |||||| || ||||||| |||| ||| ||| | ||| |||||||| ||| |||||||||||    
T  31963113 cacttgataagaagtttaaaatggaaattttgttttggaatttgtgtattcaacacattgaaacattaaaaagta 31963039  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 41072505 - 41072425
Alignment:
Q  162 aaggacacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagtaa 242  Q
    ||||||||||||||| ||||||||| |||||| |||| ||||||| ||| ||||| |||||||| ||| |  |||||||||    
T  41072505 aaggacacttgataaaaaatttaaaatgaaaactttactttagaaattgtgcattcaacacattgaaacaacaaaaagtaa 41072425  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 1799504 - 1799574
Alignment:
Q  140 gaaaaacgctaacaactgtcttaaggacacttgataagaaatttaaagtgaaaattttattttagaagttg 210  Q
    |||||| |||||||| || ||| |||  | |||||||||| ||||||||| |||||||||||| |||||||    
T  1799504 gaaaaatgctaacaagtgcctttaggttatttgataagaagtttaaagtgtaaattttattttggaagttg 1799574  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 27915204 - 27915279
Alignment:
Q  163 aggacacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaa 238  Q
    |||||||||||||||||||||||| || ||  ||||| ||| |||||| | ||| |||||||| ||||||||||||    
T  27915204 aggacacttgataagaaatttaaaatggaaggtttatcttaaaagttgtgtattcaacacattcaaatattaaaaa 27915279  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 11123453 - 11123523
Alignment:
Q  168 acttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaa 238  Q
    |||||||||||| |||||||||||||||||||  ||||| ||| | ||| |||| ||||||| || |||||    
T  11123453 acttgataagaagtttaaagtgaaaattttatcatagaatttgtgtattcaacatattaaaacatcaaaaa 11123523  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 26009803 - 26009729
Alignment:
Q  165 gacacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaag 239  Q
    |||||||||||||||||||||||| |||| ||||| || ||| ||| | ||| || | ||| |||||||||||||    
T  26009803 gacacttgataagaaatttaaagtaaaaactttatcttggaatttgtgtattcaaaatattgaaatattaaaaag 26009729  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 7859246 - 7859167
Alignment:
Q  163 aggacacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagtaa 242  Q
    ||||| |||||||| || |||||||||  |||||||| ||  |||||| | ||| |||||||||||| ||||||||||||    
T  7859246 aggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacacattaaaacattaaaaagtaa 7859167  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 41657719 - 41657677
Alignment:
Q  160 ttaaggacacttgataagaaatttaaagtgaaaattttatttt 202  Q
    ||||||||||||||||| |||||||||||| | ||||||||||    
T  41657719 ttaaggacacttgataaaaaatttaaagtggagattttatttt 41657677  T

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