View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7607_low_23 (Length: 463)

Name: NF7607_low_23
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7607_low_23
NF7607_low_23
[»] chr3 (4 HSPs)
chr3 (338-385)||(41489786-41489833)
chr3 (68-131)||(16024807-16024873)
chr3 (66-131)||(1741988-1742056)
chr3 (95-127)||(16024545-16024577)
[»] chr5 (5 HSPs)
chr5 (259-299)||(30238967-30239007)
chr5 (95-131)||(26032267-26032303)
chr5 (95-131)||(38445999-38446035)
chr5 (95-131)||(40972152-40972188)
chr5 (67-131)||(32892140-32892202)
[»] chr4 (4 HSPs)
chr4 (66-131)||(17947287-17947355)
chr4 (99-131)||(5521540-5521572)
chr4 (95-131)||(11692170-11692206)
chr4 (95-131)||(51203240-51203276)
[»] chr2 (6 HSPs)
chr2 (64-124)||(578237-578300)
chr2 (95-128)||(35665349-35665382)
chr2 (99-131)||(28191459-28191491)
chr2 (98-130)||(7693587-7693619)
chr2 (95-131)||(12496886-12496922)
chr2 (99-131)||(17642636-17642668)
[»] chr7 (1 HSPs)
chr7 (96-128)||(30219060-30219092)
[»] chr1 (4 HSPs)
chr1 (95-131)||(1691572-1691608)
chr1 (95-130)||(33262005-33262040)
chr1 (95-130)||(33282164-33282199)
chr1 (99-131)||(27695735-27695767)
[»] chr8 (1 HSPs)
chr8 (64-128)||(23757309-23757376)
[»] chr6 (1 HSPs)
chr6 (95-128)||(31836903-31836936)
[»] scaffold0939 (1 HSPs)
scaffold0939 (64-131)||(705-775)


Alignment Details
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 385
Target Start/End: Complemental strand, 41489833 - 41489786
Alignment:
Q  338 gaaagaacattctttttattctttcatcaaaggaaaaggtatatacat 385  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41489833 gaaagaacattctttttattctttcatcaaaggaaaaagtatatacat 41489786  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 16024807 - 16024873
Alignment:
Q  68 tgtggggatgaaaacaactcatttt---tgttagggactaaaatcaaaattcgctatatttataggg 131  Q
    |||| ||||||||||| ||||||||   | ||||||||||||||||||||| | |||||||||||||    
T  16024807 tgtgaggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatatatttataggg 16024873  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 1742056 - 1741988
Alignment:
Q  66 tttgtggggatgaaaacaactcatttt---tgttagggactaaaatcaaaattcgctatatttataggg 131  Q
    |||||| ||||||||||| ||||||||   | ||||||| ||||||||||||| | |||||||||||||    
T  1742056 tttgtgaggatgaaaacatctcattttattttttagggattaaaatcaaaatttgatatatttataggg 1741988  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 16024577 - 16024545
Alignment:
Q  95 ttagggactaaaatcaaaattcgctatatttat 127  Q
    ||||||| |||||||||||||||||||||||||    
T  16024577 ttagggattaaaatcaaaattcgctatatttat 16024545  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 30239007 - 30238967
Alignment:
Q  259 tttccaatccattgatcacaaaatgtattctccaatacata 299  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  30239007 tttccaatccattgatcacaaaatgtattctccaagacata 30238967  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 26032303 - 26032267
Alignment:
Q  95 ttagggactaaaatcaaaattcgctatatttataggg 131  Q
    ||||||| |||||||||||||||||||||||||||||    
T  26032303 ttagggattaaaatcaaaattcgctatatttataggg 26032267  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 38445999 - 38446035
Alignment:
Q  95 ttagggactaaaatcaaaattcgctatatttataggg 131  Q
    ||||||||||||||||||||||||| |||||||||||    
T  38445999 ttagggactaaaatcaaaattcgctgtatttataggg 38446035  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 40972152 - 40972188
Alignment:
Q  95 ttagggactaaaatcaaaattcgctatatttataggg 131  Q
    ||||||||||||||||||||||| |||||||||||||    
T  40972152 ttagggactaaaatcaaaattcgttatatttataggg 40972188  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 32892202 - 32892140
Alignment:
Q  67 ttgtggggatgaaaacaactcatttttgttagggactaaaatcaaaattcgctatatttataggg 131  Q
    ||||| ||||||||||| |||||||||  || |||||||||||||||||  | ||||||||||||    
T  32892202 ttgtgaggatgaaaacatctcattttt--tatggactaaaatcaaaatttaccatatttataggg 32892140  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 17947287 - 17947355
Alignment:
Q  66 tttgtggggatgaaaacaactcatttt---tgttagggactaaaatcaaaattcgctatatttataggg 131  Q
    |||||| ||||||||||| ||||||||   | ||||||||||||||||||||| | |||||||||||||    
T  17947287 tttgtgaggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatatatttataggg 17947355  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 5521540 - 5521572
Alignment:
Q  99 ggactaaaatcaaaattcgctatatttataggg 131  Q
    |||||||||||||||||||||||||||||||||    
T  5521540 ggactaaaatcaaaattcgctatatttataggg 5521572  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 11692206 - 11692170
Alignment:
Q  95 ttagggactaaaatcaaaattcgctatatttataggg 131  Q
    |||| ||||||||||||||||||||||||||||||||    
T  11692206 ttagagactaaaatcaaaattcgctatatttataggg 11692170  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 51203276 - 51203240
Alignment:
Q  95 ttagggactaaaatcaaaattcgctatatttataggg 131  Q
    |||||||||||||||||||||||| ||||||||||||    
T  51203276 ttagggactaaaatcaaaattcgcaatatttataggg 51203240  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 578300 - 578237
Alignment:
Q  64 aatttgtggggatgaaaacaactcatttt---tgttagggactaaaatcaaaattcgctatatt 124  Q
    ||||||| |||||||||||| ||||||||   | ||||||||||||||||||||| ||||||||    
T  578300 aatttgtcgggatgaaaacatctcattttattttttagggactaaaatcaaaatttgctatatt 578237  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 35665382 - 35665349
Alignment:
Q  95 ttagggactaaaatcaaaattcgctatatttata 128  Q
    ||||||||||||||||||||||||||||||||||    
T  35665382 ttagggactaaaatcaaaattcgctatatttata 35665349  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 28191491 - 28191459
Alignment:
Q  99 ggactaaaatcaaaattcgctatatttataggg 131  Q
    |||||||||||||||||||||||||||||||||    
T  28191491 ggactaaaatcaaaattcgctatatttataggg 28191459  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 7693619 - 7693587
Alignment:
Q  98 gggactaaaatcaaaattcgctatatttatagg 130  Q
    ||||||||||||||||||| |||||||||||||    
T  7693619 gggactaaaatcaaaattctctatatttatagg 7693587  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 12496886 - 12496922
Alignment:
Q  95 ttagggactaaaatcaaaattcgctatatttataggg 131  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  12496886 ttaggaactaaaatcaaaattcgttatatttataggg 12496922  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 17642636 - 17642668
Alignment:
Q  99 ggactaaaatcaaaattcgctatatttataggg 131  Q
    ||||||||||||||||||||||||||| |||||    
T  17642636 ggactaaaatcaaaattcgctatatttttaggg 17642668  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 30219060 - 30219092
Alignment:
Q  96 tagggactaaaatcaaaattcgctatatttata 128  Q
    |||||||||||||||||||||||||||||||||    
T  30219060 tagggactaaaatcaaaattcgctatatttata 30219092  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 1691572 - 1691608
Alignment:
Q  95 ttagggactaaaatcaaaattcgctatatttataggg 131  Q
    |||| ||||||||||||||||||||||||||||||||    
T  1691572 ttagagactaaaatcaaaattcgctatatttataggg 1691608  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 130
Target Start/End: Original strand, 33262005 - 33262040
Alignment:
Q  95 ttagggactaaaatcaaaattcgctatatttatagg 130  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33262005 ttagggactaaaatcaaaattagctatatttatagg 33262040  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 130
Target Start/End: Original strand, 33282164 - 33282199
Alignment:
Q  95 ttagggactaaaatcaaaattcgctatatttatagg 130  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33282164 ttagggactaaaatcaaaattagctatatttatagg 33282199  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 27695735 - 27695767
Alignment:
Q  99 ggactaaaatcaaaattcgctatatttataggg 131  Q
    ||||||||| |||||||||||||||||||||||    
T  27695735 ggactaaaaacaaaattcgctatatttataggg 27695767  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 23757376 - 23757309
Alignment:
Q  64 aatttgtggggatgaaaacaactcatttt---tgttagggactaaaatcaaaattcgctatatttata 128  Q
    |||||||| ||||||||||| ||||||||   | ||||||| |||||| |||||| ||||||||||||    
T  23757376 aatttgtgaggatgaaaacatctcattttattttttagggattaaaattaaaatttgctatatttata 23757309  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 31836903 - 31836936
Alignment:
Q  95 ttagggactaaaatcaaaattcgctatatttata 128  Q
    |||||| |||||||||||||||||||||||||||    
T  31836903 ttaggggctaaaatcaaaattcgctatatttata 31836936  T

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Target: scaffold0939 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 705 - 775
Alignment:
Q  64 aatttgtggggatgaaaacaactcatt---tttgttagggactaaaatcaaaattcgctatatttataggg 131  Q
    ||||||||  |||||||||||||||||   ||| ||||||| |||||| |||||| | |||||||||||||    
T  705 aatttgtgatgatgaaaacaactcattatattttttagggaataaaattaaaatttgttatatttataggg 775  T

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